Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU74_RS02070 Genome accession   NZ_AP024883
Coordinates   487864..488397 (+) Length   177 a.a.
NCBI ID   WP_087482429.1    Uniprot ID   A0A1Y6J265
Organism   Vibrio mangrovi strain CECT 7927     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 482864..493397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS02060 galU 485937..486824 (-) 888 WP_087482540.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU74_RS02065 qstR 486944..487591 (-) 648 WP_087482541.1 response regulator transcription factor Regulator
  OCU74_RS02070 ssb 487864..488397 (+) 534 WP_087482429.1 single-stranded DNA-binding protein Machinery gene
  OCU74_RS02075 - 488744..489349 (+) 606 WP_087482430.1 4Fe-4S dicluster domain-containing protein -
  OCU74_RS02080 hyfB 489354..491384 (+) 2031 WP_087482431.1 hydrogenase 4 subunit B -
  OCU74_RS02085 - 491381..492337 (+) 957 WP_390623637.1 respiratory chain complex I subunit 1 family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19683.83 Da        Isoelectric Point: 5.2252

>NTDB_id=89068 OCU74_RS02070 WP_087482429.1 487864..488397(+) (ssb) [Vibrio mangrovi strain CECT 7927]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGYNGVMQMLGGRQGPGGQPQPGMQSQQQGGWGQPQQPMQSQPVQQPQHQPQQSAP
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=89068 OCU74_RS02070 WP_087482429.1 487864..488397(+) (ssb) [Vibrio mangrovi strain CECT 7927]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTTGGAAGTGATCCTGAAGTTCGTTATATGCCAAGTGG
TGGTGCTGTTGCGAACATCACGATTGCGACGTCAGAAACATGGCGTGATAAAACCACGGGTGAGCAGAGAGAGAAAACCG
AGTGGCATCGTGTTGCGTTGTTCGGCAAATTAGCAGAAGTTGCCGGAGAATATTTACGGAAAGGTTCTCAGGTTTATATT
GAGGGACAACTACAGACCCGTAAATGGCAGGATCAAAGTGGCCAGGAGCGTTATACGACAGAAGTCGTTGTTCAGGGGTA
TAATGGTGTCATGCAGATGTTGGGTGGACGTCAGGGACCTGGAGGCCAGCCTCAACCAGGGATGCAATCTCAACAGCAGG
GTGGATGGGGACAGCCTCAGCAGCCGATGCAATCTCAACCAGTTCAGCAACCTCAACATCAGCCTCAACAGTCCGCACCT
CAGCCTCAGTATAATGAGCCGCCAATGGATTTTGATGATGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6J265

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.522

100

0.847
  ssb Glaesserella parasuis strain SC1401

52.308

100

0.576
  ssb Neisseria meningitidis MC58

46.629

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.469

Multiple sequence alignment