Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU74_RS02065 Genome accession   NZ_AP024883
Coordinates   486944..487591 (-) Length   215 a.a.
NCBI ID   WP_087482541.1    Uniprot ID   A0A1Y6J109
Organism   Vibrio mangrovi strain CECT 7927     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 481944..492591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS02055 uvrA 482854..485676 (-) 2823 WP_087482428.1 excinuclease ABC subunit UvrA -
  OCU74_RS02060 galU 485937..486824 (-) 888 WP_087482540.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU74_RS02065 qstR 486944..487591 (-) 648 WP_087482541.1 response regulator transcription factor Regulator
  OCU74_RS02070 ssb 487864..488397 (+) 534 WP_087482429.1 single-stranded DNA-binding protein Machinery gene
  OCU74_RS02075 - 488744..489349 (+) 606 WP_087482430.1 4Fe-4S dicluster domain-containing protein -
  OCU74_RS02080 hyfB 489354..491384 (+) 2031 WP_087482431.1 hydrogenase 4 subunit B -
  OCU74_RS02085 - 491381..492337 (+) 957 WP_390623637.1 respiratory chain complex I subunit 1 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25370.21 Da        Isoelectric Point: 9.6404

>NTDB_id=89067 OCU74_RS02065 WP_087482541.1 486944..487591(-) (qstR) [Vibrio mangrovi strain CECT 7927]
MNRSNYNRTLYILYPDNQEPSAIYNEIEIQLGQILPKIQPRQFMLSHHTDRHKILLFDYQHKETLLSHLNTYNVLDYRIE
TVAINVEKRPRTEELLQLGNLKGLFYRSDPIDLIITALREIRDGQIYLPRHICGQLLHYYRYLFKNQNISATISLTSREL
EILRCLKTGATNTQIADSLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=89067 OCU74_RS02065 WP_087482541.1 486944..487591(-) (qstR) [Vibrio mangrovi strain CECT 7927]
ATGAACAGATCAAACTACAACAGAACTCTTTACATTCTTTATCCCGATAATCAGGAACCTTCAGCGATTTATAACGAGAT
AGAAATACAACTAGGGCAGATACTACCAAAGATTCAGCCCCGACAGTTTATGCTTTCCCACCATACTGACAGACATAAAA
TCCTCCTGTTTGATTATCAACACAAAGAAACGCTACTATCGCACCTGAATACATATAATGTACTGGATTATCGTATTGAA
ACCGTTGCTATTAATGTCGAGAAACGTCCCAGAACAGAGGAATTACTTCAGTTAGGAAACTTAAAAGGGCTATTCTATCG
TAGCGATCCTATTGACTTAATTATCACAGCACTACGAGAGATCCGCGACGGGCAAATCTATTTACCTCGACACATCTGCG
GTCAACTCCTACACTACTATCGATATTTATTTAAGAATCAGAATATCAGTGCAACCATATCCCTAACTTCCAGAGAATTG
GAAATTCTGCGTTGTTTAAAGACAGGTGCGACAAATACACAAATCGCTGATAGTCTGTTTATCAGTGAATTTACCGTAAA
ATCGCATTTGTATCAGATCTTTAAAAAAATATCCGTAAAAAATCGAACACAAGCCACAACATGGGCGAAACAAAACCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6J109

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

49.309

100

0.498
  qstR Vibrio campbellii strain DS40M4

45.249

100

0.465
  qstR Vibrio parahaemolyticus RIMD 2210633

43.721

100

0.437

Multiple sequence alignment