Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Pcarn_RS13595 Genome accession   NZ_AP024881
Coordinates   2932631..2934154 (-) Length   507 a.a.
NCBI ID   WP_261834345.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2927631..2939154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS13570 - 2927982..2928248 (+) 267 WP_261834340.1 YihD family protein -
  Pcarn_RS13575 ccoG 2928361..2929773 (+) 1413 WP_261834341.1 cytochrome c oxidase accessory protein CcoG -
  Pcarn_RS13580 - 2929879..2930865 (+) 987 WP_261834342.1 serine/threonine protein kinase -
  Pcarn_RS13585 - 2930920..2931522 (+) 603 WP_261834343.1 thiol:disulfide interchange protein DsbA/DsbL -
  Pcarn_RS13590 - 2931562..2932434 (-) 873 WP_261834344.1 acyltransferase -
  Pcarn_RS13595 comM 2932631..2934154 (-) 1524 WP_261834345.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Pcarn_RS13600 ilvG 2934574..2936220 (+) 1647 WP_261834346.1 acetolactate synthase 2 catalytic subunit -
  Pcarn_RS13605 ilvM 2936232..2936516 (+) 285 WP_261834347.1 acetolactate synthase 2 small subunit -
  Pcarn_RS13610 - 2936529..2937473 (+) 945 WP_261834348.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54861.00 Da        Isoelectric Point: 6.8681

>NTDB_id=89057 Pcarn_RS13595 WP_261834345.1 2932631..2934154(-) (comM) [Vibrio ishigakensis strain C1]
MGLAIIHSRASVGIDAPQVTVEVHIGPGMPGFHLVGLAETSVKESKDRVRSAILNSKFLFPSRKITVNLAPADLPKDGGR
FDLPIAIGILIASEQLPTDRINDTELLGELALSGELRAVNGVIAAAMASNKHQRVLISPEGNANEVALVDKERNLSANSL
IQVAAFLAGQLTLELKNDKEEASPLSLERDLQDIIGQHQGKRALEIAAAGGHNILFLGPPGTGKTMLATRLVDLLPEMQT
EEALQVAALSSLVGKVSIGCSWRQRPFRSPHHSSSMVALVGGGSTPKPGEISLAHNGVLFLDEVPEFERRVLDALREPLE
AGEIVISRAAGKSTFPANFQLVAALNPSPSGHYREGQVRINPQAILRYLNKVSGPFLDRFDMSLEIPLLPRGALHNGSRG
ESTQEVKSRVLKARDLMLIRSNKPNAQLQSREIQEVCSLESADEGFLENAILSLGLSIRAYHRILRVSRTIADLEGCEAI
QRHHLAEALGYRSMDKLLIELNQQISC

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=89057 Pcarn_RS13595 WP_261834345.1 2932631..2934154(-) (comM) [Vibrio ishigakensis strain C1]
ATGGGGTTAGCCATCATCCATAGTAGAGCGAGTGTAGGAATCGACGCACCTCAGGTGACAGTTGAGGTTCACATAGGTCC
AGGCATGCCGGGCTTTCATCTGGTTGGGCTGGCTGAGACCAGTGTGAAGGAATCAAAAGACAGGGTACGAAGCGCAATAC
TGAATTCTAAGTTTCTGTTTCCGAGCCGCAAGATAACTGTCAATCTAGCCCCAGCAGACCTGCCTAAAGATGGTGGCCGA
TTCGACCTTCCAATCGCCATAGGGATACTCATTGCCAGTGAACAACTCCCTACAGATAGAATTAACGACACTGAATTGTT
GGGAGAGTTAGCCCTATCTGGAGAGCTTAGAGCAGTTAATGGTGTGATAGCGGCCGCTATGGCGAGTAATAAGCATCAAC
GAGTCCTTATTTCCCCAGAGGGCAATGCCAATGAGGTTGCTCTGGTAGATAAAGAGCGCAACCTGTCGGCTAACTCCTTG
ATTCAAGTAGCGGCCTTCCTAGCAGGGCAACTAACCCTAGAGCTAAAGAATGATAAAGAGGAGGCCAGTCCTTTATCGCT
AGAAAGAGACCTTCAGGACATCATAGGCCAGCATCAGGGAAAGAGGGCTTTAGAGATAGCCGCAGCCGGCGGTCACAATA
TTTTGTTCTTAGGTCCTCCAGGTACAGGCAAGACAATGCTAGCTACTCGCCTAGTGGATCTCCTGCCAGAAATGCAGACA
GAAGAAGCCCTGCAGGTTGCCGCCTTATCTTCGTTAGTTGGCAAGGTTTCTATTGGCTGCAGTTGGCGACAGAGACCATT
TAGATCACCACATCACTCAAGCTCCATGGTGGCTTTGGTCGGTGGTGGTTCCACCCCAAAGCCAGGAGAGATCTCTTTGG
CTCACAACGGAGTTCTATTTCTAGACGAGGTGCCCGAATTTGAACGCAGAGTATTAGACGCCTTGCGAGAGCCATTGGAG
GCTGGCGAGATAGTCATATCTAGAGCAGCAGGAAAAAGCACTTTTCCAGCCAACTTTCAGTTAGTAGCCGCTCTAAACCC
AAGCCCTAGTGGTCATTACAGAGAGGGGCAGGTTAGGATAAACCCACAGGCGATACTGAGATACCTTAACAAGGTATCAG
GCCCTTTCTTGGATAGATTTGATATGTCTCTCGAGATTCCGTTGCTACCCAGAGGGGCATTGCACAATGGTAGTCGTGGG
GAGTCTACTCAGGAGGTAAAGAGCCGAGTTTTAAAGGCTCGTGACTTAATGCTTATTCGTTCAAACAAGCCAAACGCTCA
ATTGCAGAGCCGCGAGATACAAGAGGTGTGCTCGCTAGAAAGTGCTGATGAGGGCTTTCTTGAGAACGCGATCTTGAGCC
TTGGCTTATCTATCCGCGCCTATCATAGAATTTTGCGTGTTTCTCGCACCATAGCTGACCTAGAGGGTTGTGAAGCTATT
CAAAGACATCATCTGGCTGAGGCGCTGGGGTACCGCTCGATGGATAAACTACTGATTGAATTGAATCAGCAGATTTCTTG
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

66.931

99.606

0.667
  comM Vibrio cholerae strain A1552

66.139

99.606

0.659
  comM Glaesserella parasuis strain SC1401

61.933

100

0.619
  comM Haemophilus influenzae Rd KW20

60.158

100

0.602
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.356

99.606

0.442

Multiple sequence alignment