Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RXA29_RS04670 Genome accession   NZ_CP136339
Coordinates   1081251..1082777 (+) Length   508 a.a.
NCBI ID   WP_057085356.1    Uniprot ID   A0AAX4F1H0
Organism   Dickeya solani strain CFBP5647     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1076251..1087777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXA29_RS04645 (RXA29_04645) ilvE 1076442..1077368 (-) 927 WP_022635278.1 branched-chain-amino-acid transaminase -
  RXA29_RS04650 (RXA29_04650) ilvM 1077393..1077650 (-) 258 WP_022635279.1 acetolactate synthase 2 small subunit -
  RXA29_RS04655 (RXA29_04655) ilvG 1077668..1079314 (-) 1647 WP_057085358.1 acetolactate synthase 2 catalytic subunit -
  RXA29_RS04660 (RXA29_04660) ilvL 1079454..1079552 (-) 99 WP_071526243.1 ilv operon leader peptide -
  RXA29_RS04665 (RXA29_04665) - 1079692..1080906 (-) 1215 WP_316393529.1 MFS transporter -
  RXA29_RS04670 (RXA29_04670) comM 1081251..1082777 (+) 1527 WP_057085356.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RXA29_RS04675 (RXA29_04675) - 1082840..1083178 (-) 339 WP_022635283.1 DUF413 domain-containing protein -
  RXA29_RS04680 (RXA29_04680) hdfR 1083298..1084122 (+) 825 WP_316393530.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55421.03 Da        Isoelectric Point: 7.4033

>NTDB_id=890097 RXA29_RS04670 WP_057085356.1 1081251..1082777(+) (comM) [Dickeya solani strain CFBP5647]
MTLAVTYTRATIGMQAPEVLIEVHISNGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKAGRGLILPEDNKMEITLVPHGDALLANHL
LQVCAFLQGETPLLRGNDITPETPAHTPIADLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPPLD
DEEALESAAINSLIDIQPSLSQWRNRPFRSPHHTASITALVGGGGLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRERVFEARKRQLARIGRINAHMKSDDIACHCRLKSEDAAYLEEVMSKLGLSVRAWHRILKVSRTIADLGGED
QIHRTHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=890097 RXA29_RS04670 WP_057085356.1 1081251..1082777(+) (comM) [Dickeya solani strain CFBP5647]
ATGACACTGGCTGTGACCTACACACGAGCCACCATCGGTATGCAGGCGCCCGAGGTTTTGATTGAAGTGCATATCAGTAA
TGGCTTGCCTGCACTGACACTGGTCGGTTTACCGGAAACCACGGTCAAAGAAGCGCGAGATCGGGTGCGCAGTGCCCTGA
TCAATTGTGGCTTCACCTTTCCCGCCAAGCGGATTACCGTCAACCTGGCGCCTGCGGACCTGCCGAAAGAAGGCGGACGA
TATGACCTCCCCATCGCCCTGGCCATTCTGGCAGCCTCAGAACAGATTGCTGGTGAGAAACTTGCACAGTATGAGTTCCT
CGGTGAACTCGGGCTGTCAGGCAGCCTGAGAGGCGTTCATGGCGCTATTCCGGCGGCGATGGAAGCGCAAAAAGCTGGCC
GGGGGTTGATTCTGCCGGAAGACAACAAAATGGAAATCACGCTGGTTCCGCATGGCGATGCGCTACTGGCTAATCACCTG
CTGCAGGTCTGTGCCTTTTTGCAAGGCGAAACGCCGTTGCTGCGCGGCAACGATATTACGCCTGAAACACCAGCCCATAC
GCCGATAGCGGACCTGAAGGACATCATCGGTCAGGAACAAGCCAAACGCGCACTGGAAATTGCGGCAGCAGGCGGACATA
ACCTGCTATTACTCGGTCCACCGGGCACCGGCAAAACCATGCTGGCCAGTCGTCTGCCCGGTTTGTTGCCGCCGCTTGAT
GACGAGGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATTGATATTCAGCCCAGCCTGTCGCAATGGCGTAACCGGCC
ATTTCGTTCGCCTCACCACACCGCATCCATTACTGCGCTGGTCGGCGGCGGCGGATTGCCCAAACCTGGCGAGATCTCGC
TGGCGCATAATGGTGTGCTGTTTCTGGATGAATTGCCGGAATTTGAACGACGGGTACTGGACTCGCTGCGGGAACCGCTG
GAATCAGGTGAAATTGTGATTTCTCGTACCCGCGCCAAGGTCTGTTATCCCGCCCGTTTTCAGTTAGTGGCCGCCATGAA
TCCCAGTCCATCAGGACACTATCAGGGTATCCATAACCGTATGCCGGCACAGCAAATCCTGCGCTACCTCAACCGACTCT
CCGGTCCCTTTCTGGATCGTTTTGATTTATCCATTGAGGTGCCATTGCTGCCTCCCGGCATTCTTCGCCAGCAAACGCGT
ATTGGCGAGGACAGCGCAACCGTACGGGAGCGGGTATTTGAAGCCAGAAAACGGCAGTTAGCCCGCATCGGCAGAATCAA
CGCGCACATGAAATCGGATGACATCGCCTGTCACTGTCGGTTGAAGAGCGAGGATGCAGCGTACCTGGAGGAGGTGATGA
GCAAATTAGGGCTGTCGGTCAGAGCCTGGCACCGGATACTGAAAGTCTCGCGCACGATTGCCGACCTGGGAGGAGAAGAT
CAGATTCATCGTACTCATTTGTCGGAAGCGCTCAGCTATCGTTGTATGGATCGCCTGCTAATTCAGCTACACAAGAGCCT
AGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.439

99.606

0.632
  comM Glaesserella parasuis strain SC1401

63.116

99.803

0.63
  comM Vibrio cholerae strain A1552

62.624

99.016

0.62
  comM Vibrio campbellii strain DS40M4

61.706

99.213

0.612
  comM Legionella pneumophila str. Paris

52.008

98.031

0.51
  comM Legionella pneumophila strain ERS1305867

52.008

98.031

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.351

99.803

0.463