Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RXV79_RS24575 Genome accession   NZ_CP136336
Coordinates   5175636..5177165 (-) Length   509 a.a.
NCBI ID   WP_316700745.1    Uniprot ID   -
Organism   Piscinibacter gummiphilus strain SBD 7-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5170636..5182165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXV79_RS24560 (RXV79_24560) - 5171749..5173506 (+) 1758 WP_316700741.1 DUF1800 domain-containing protein -
  RXV79_RS24565 (RXV79_24565) - 5173520..5175028 (+) 1509 WP_316700743.1 DUF1501 domain-containing protein -
  RXV79_RS24570 (RXV79_24570) - 5175051..5175632 (+) 582 WP_316700744.1 glycine zipper 2TM domain-containing protein -
  RXV79_RS24575 (RXV79_24575) comM 5175636..5177165 (-) 1530 WP_316700745.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RXV79_RS24580 (RXV79_24580) - 5177442..5178203 (+) 762 WP_316700746.1 TorF family putative porin -
  RXV79_RS24585 (RXV79_24585) glnK 5178230..5178568 (+) 339 WP_201809505.1 P-II family nitrogen regulator -
  RXV79_RS24590 (RXV79_24590) - 5178598..5180100 (+) 1503 WP_316700748.1 ammonium transporter -
  RXV79_RS24595 (RXV79_24595) gshA 5180273..5181568 (+) 1296 WP_316700749.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 53800.83 Da        Isoelectric Point: 7.7801

>NTDB_id=890083 RXV79_RS24575 WP_316700745.1 5175636..5177165(-) (comM) [Piscinibacter gummiphilus strain SBD 7-3]
MSLAVIHSRALDGLAAPEVTVEVHLANGLPSFTLVGLADTEVKEARERVRAALQNSGLEFPFNKRITVNLAPADLPKETG
RFDLPIALGILAASGQIDTALLDRYEFAGELSLSGELRPVRGALAMGLALKRREGPVPRALVLPQGSAQEAALVEGLPIY
GAGHLLEVVQALLPGDATQRGELVRAQARLSTVAETLPDLREVKGQAGAKRALEVAAAGSHSLLMMGPPGTGKSMLAQRF
AGLLPPLTQDEALESAAVLSLYHGFSPERWRVRNVRAPHHGASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFPRAAL
EALREPMETGRVTISRAARQAEYPASFQLIAAMNPCPCGHLGSPLRACRCTPDVVLRYQGRLSGPLLDRIDLQVEVPAVS
PDTLASAPDGEPSAQVADRVLAAREAALSRQGCSNARLAGSAIDAHCALGDAETRLLQSASARLGWSARSYHRVLRVART
VADLAASPVIRAPHLAEAIQYRRLLMAPS

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=890083 RXV79_RS24575 WP_316700745.1 5175636..5177165(-) (comM) [Piscinibacter gummiphilus strain SBD 7-3]
ATGTCATTGGCGGTGATCCACAGCCGCGCGCTCGACGGCCTGGCGGCGCCGGAGGTCACGGTCGAGGTCCACCTGGCCAA
CGGCCTGCCGAGCTTCACGCTGGTCGGCCTGGCCGACACCGAGGTCAAGGAGGCGCGGGAGCGCGTTCGGGCGGCGCTGC
AGAACAGCGGCCTCGAATTCCCCTTTAACAAGCGCATCACGGTGAACCTGGCGCCGGCCGACCTGCCCAAGGAGACCGGT
CGCTTCGACCTGCCGATTGCACTGGGCATCCTCGCTGCCAGCGGGCAGATCGACACCGCCCTGCTCGACCGCTACGAGTT
TGCCGGCGAGTTGTCGCTCTCGGGTGAACTGCGCCCGGTGCGCGGCGCGTTGGCGATGGGCCTGGCGCTCAAGCGCCGCG
AAGGGCCGGTGCCGCGTGCGCTGGTGCTGCCGCAGGGCAGCGCGCAGGAAGCCGCGCTGGTTGAGGGCTTGCCGATCTAC
GGCGCGGGCCATCTGCTCGAGGTCGTGCAGGCGCTGTTGCCCGGCGATGCGACGCAGCGAGGCGAGCTGGTACGGGCGCA
AGCCCGGCTGTCGACGGTCGCCGAGACACTCCCCGACCTGCGCGAGGTGAAGGGCCAGGCCGGCGCCAAACGTGCGCTCG
AGGTGGCCGCCGCGGGCAGCCATTCACTCCTGATGATGGGCCCGCCTGGCACCGGCAAGTCGATGCTGGCGCAGCGCTTC
GCAGGCCTGTTGCCGCCGCTCACGCAAGACGAAGCCCTGGAATCGGCCGCCGTGCTGAGCCTGTACCACGGCTTCTCGCC
CGAGCGCTGGAGGGTGCGCAACGTGCGTGCGCCGCACCACGGGGCGTCCGCGGTGGCGCTCGTCGGGGGCGGCTCGCCGC
CTCGCCCGGGTGAGATCTCGCTGGCCCATCATGGTGTGCTCTTCCTCGATGAACTGCCCGAGTTCCCGCGGGCCGCGCTC
GAAGCCTTGCGCGAGCCGATGGAGACCGGCCGCGTCACCATCTCGCGGGCCGCACGCCAGGCCGAATACCCGGCCTCGTT
CCAGTTGATCGCCGCGATGAACCCGTGCCCGTGCGGCCACCTGGGCAGCCCCTTGCGGGCCTGCCGGTGCACGCCCGATG
TGGTGCTGCGCTACCAGGGCCGGCTCAGCGGCCCTTTGCTCGACCGCATCGACCTGCAGGTGGAGGTGCCGGCTGTCTCG
CCCGACACGCTCGCGTCGGCACCGGATGGCGAGCCCAGCGCCCAGGTGGCCGATCGGGTGCTGGCCGCGCGCGAGGCGGC
GCTGTCACGCCAGGGGTGCAGCAACGCGCGCCTGGCGGGCTCGGCGATCGACGCGCATTGCGCGCTCGGCGACGCGGAGA
CGCGGCTGCTGCAGAGCGCTTCGGCGCGCCTGGGCTGGTCGGCACGCAGCTACCACCGCGTGCTGCGGGTGGCGCGCACC
GTGGCCGACCTCGCCGCCAGCCCGGTGATCCGGGCGCCGCACCTGGCCGAGGCGATCCAGTACCGGCGCCTGCTCATGGC
GCCCTCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.465

99.214

0.53
  comM Vibrio campbellii strain DS40M4

52.063

100

0.521
  comM Glaesserella parasuis strain SC1401

51.866

100

0.519
  comM Haemophilus influenzae Rd KW20

50.493

99.607

0.503
  comM Legionella pneumophila str. Paris

48.356

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.356

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.727

100

0.45