Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU45_RS13840 Genome accession   NZ_AP024873
Coordinates   3085605..3086141 (+) Length   178 a.a.
NCBI ID   WP_072958012.1    Uniprot ID   A0A1M4ZW81
Organism   Vibrio gazogenes strain ATCC 29988     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3080605..3091141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS13825 uvrA 3080719..3083541 (-) 2823 WP_072958019.1 excinuclease ABC subunit UvrA -
  OCU45_RS13830 galU 3083680..3084567 (-) 888 WP_072958017.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU45_RS13835 qstR 3084685..3085332 (-) 648 WP_072958014.1 response regulator transcription factor Regulator
  OCU45_RS13840 ssb 3085605..3086141 (+) 537 WP_072958012.1 single-stranded DNA-binding protein Machinery gene
  OCU45_RS13845 metH 3086238..3089912 (-) 3675 WP_072958010.1 methionine synthase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19752.74 Da        Isoelectric Point: 5.2252

>NTDB_id=88997 OCU45_RS13840 WP_072958012.1 3085605..3086141(+) (ssb) [Vibrio gazogenes strain ATCC 29988]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGSGGQTQSQPGMQAQQQNSGWGQPQQPQSQAAHQQQPQQQST
PQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=88997 OCU45_RS13840 WP_072958012.1 3085605..3086141(+) (ssb) [Vibrio gazogenes strain ATCC 29988]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTTGGAAGTGATCCTGAAGTTCGTTACATGCCAAGTGG
CGGTGCAGTTGCGAACATCACGATTGCAACATCGGAAACATGGCGCGATAAGACAACGGGTGAGCAAAGAGAAAAAACCG
AGTGGCACCGTGTCGCCCTGTTCGGAAAGTTGGCAGAAGTCGCAGGAGAATACCTACGCAAAGGTTCTCAGGTATATATT
GAAGGACAGCTGCAAACGCGGAAATGGCAGGATCAAAGCGGTCAGGAGCGTTATACAACTGAAGTTGTTGTTCAAGGGTT
TAACGGTGTGATGCAAATGCTAGGTGGTCGCCAAGGCTCTGGTGGTCAAACGCAGTCTCAGCCGGGGATGCAAGCTCAAC
AACAAAACAGTGGATGGGGACAGCCTCAACAGCCGCAATCACAAGCAGCGCATCAGCAGCAACCTCAGCAACAATCGACA
CCACAACCACAATACAATGAACCACCAATGGATTTCGATGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4ZW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

54.054

100

0.562
  ssb Neisseria meningitidis MC58

47.027

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.466

Multiple sequence alignment