Detailed information NTG0088996

Bioinformatically predicted

Overview

• Name: qstR
• Type: Regulator
• Locus tag: OCU45_RS13835
• Genome accession: NZ_AP024873
• Coordinates: 3084685..3085332 (-)
• Length: 215 a.a.
• NCBI ID: WP_072958014.1
• Uniprot ID: A0A1M4ZV84
• Organism: Vibrio gazogenes strain ATCC 29988
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 3079685..3090332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU45_RS13825	uvrA	3080719..3083541 (-)	2823	WP_072958019.1	excinuclease ABC subunit UvrA	-
OCU45_RS13830	galU	3083680..3084567 (-)	888	WP_072958017.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-
OCU45_RS13835	qstR	3084685..3085332 (-)	648	WP_072958014.1	response regulator transcription factor	Regulator
OCU45_RS13840	ssb	3085605..3086141 (+)	537	WP_072958012.1	single-stranded DNA-binding protein	Machinery gene
OCU45_RS13845	metH	3086238..3089912 (-)	3675	WP_072958010.1	methionine synthase	-

Sequence

Protein

• Length: 215 a.a.
• Molecular weight: 25129.12 Da
• Isoelectric Point: 9.4355

>NTDB_id=88996 OCU45_RS13835 WP_072958014.1 3084685..3085332(-) (qstR) [Vibrio gazogenes strain ATCC 29988]
MKRSNYSRVLYVLYPDNQEPSTLYHEIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQQKEVLLSRLNMDDALDLCLE
TVVINVEKRPRTEELLQLGNLKGLFYRSDPIELIIAALREIREGQIYLPRHICGQLLHYYRHLFNNKNVSAAISLTSREL
EILRCLKTGASNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide

• Length: 648 bp

>NTDB_id=88996 OCU45_RS13835 WP_072958014.1 3084685..3085332(-) (qstR) [Vibrio gazogenes strain ATCC 29988]
ATGAAAAGATCAAATTACAGCAGAGTGCTTTATGTCCTCTATCCCGATAATCAAGAACCCTCAACGCTCTATCATGAAAT
CGAGGTCGCACTAGGACAGATACTCCCCAAAATTCAACCCCGGCAATTTATGCTGTCTCATCAGACCGATCGGCACAAAA
TACTCCTGTTTGATTATCAACAAAAAGAAGTATTGCTATCCCGCTTGAATATGGATGACGCACTGGATTTGTGCCTCGAA
ACCGTAGTTATCAATGTTGAGAAGCGCCCGAGAACAGAAGAGCTTCTCCAGCTCGGTAATTTGAAAGGGCTGTTTTATCG
TAGTGATCCGATTGAATTGATCATTGCTGCGTTGCGCGAAATCCGAGAGGGGCAAATTTATTTACCGCGACATATTTGTG
GCCAGCTTCTTCATTACTATCGCCATTTATTTAACAATAAAAATGTCAGTGCGGCGATATCTTTGACGTCTAGAGAGTTG
GAAATCCTGCGTTGTCTGAAAACGGGGGCATCGAACACACAAATTGCAGATAATCTGTTTATCAGTGAATTTACGGTCAA
ATCACATTTGTATCAGATTTTTAAGAAAATCTCTGTGAAAAACCGCACTCAAGCCACAACATGGGCAAAACAGAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (154-209)

3D structure

• AlphaFold DB: A0A1M4ZV84

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
qstR	Vibrio cholerae strain A1552	50.23	100	0.507
qstR	Vibrio campbellii strain DS40M4	46.759	100	0.47
qstR	Vibrio parahaemolyticus RIMD 2210633	45.413	100	0.46