Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RVY87_RS20340 Genome accession   NZ_CP136240
Coordinates   4457925..4459412 (+) Length   495 a.a.
NCBI ID   WP_316309006.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain HF-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4452925..4464412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY87_RS20320 (RVY87_20320) glnK 4454000..4454338 (-) 339 WP_014996495.1 P-II family nitrogen regulator -
  RVY87_RS20325 (RVY87_20325) - 4454648..4454905 (+) 258 WP_080531707.1 accessory factor UbiK family protein -
  RVY87_RS20330 (RVY87_20330) - 4454909..4456819 (-) 1911 WP_262459031.1 alkyl sulfatase dimerization domain-containing protein -
  RVY87_RS20335 (RVY87_20335) - 4456921..4457820 (+) 900 WP_022994774.1 LysR family transcriptional regulator -
  RVY87_RS20340 (RVY87_20340) comM 4457925..4459412 (+) 1488 WP_316309006.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RVY87_RS20345 (RVY87_20345) - 4459384..4460292 (-) 909 WP_316309008.1 DMT family transporter -
  RVY87_RS20350 (RVY87_20350) - 4460385..4461176 (+) 792 WP_022994771.1 helix-turn-helix transcriptional regulator -
  RVY87_RS20355 (RVY87_20355) - 4461184..4461930 (-) 747 WP_316309011.1 SDR family NAD(P)-dependent oxidoreductase -
  RVY87_RS20360 (RVY87_20360) - 4462101..4463135 (-) 1035 WP_026948312.1 AraC family transcriptional regulator -
  RVY87_RS20365 (RVY87_20365) - 4463539..4464303 (-) 765 WP_316309014.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53279.04 Da        Isoelectric Point: 8.2717

>NTDB_id=889754 RVY87_RS20340 WP_316309006.1 4457925..4459412(+) (comM) [Alloalcanivorax xenomutans strain HF-10]
MNITSLLSRASRGIDAVPVTVETHLAPGLPGFTIVGLPDTAVRESRDRVRSALVTSGFEFPQRRITVNLAPADLPKDGGR
FDLPIALGILLASGQLGRADIDGHEFIGELALSGRLNPVPALLPAALACASAGHTLVVPAENADEAALAGARTLAVTSLN
DLCAHLRGATPLPCHPAPDIDRQSVPHHPCLADVRGQISGKRVLEIAAAGGHSLLLCGPPGAGKSLLASRLPGLLPPLDR
DQALEVAAVYSLRASRPAEHFLQRPYRSPHHTTSAIALVGGGSRPRPGEISLAHHGVLFLDELPEFERRVLEVLREPLET
GEVHIARTAQQLTFPARFQLVAAMNPCPCGYLGDPERGCGYRCEKARRYQARLSGPLLDRIDLHLDLPPLPAAELLQGQP
GESSERVRQRVIAARQRQQQRQGRLNRDLPADTLEAILAPHRAWLIETMERLGLSARALHRSLRVARTIADLAGADRVDR
AHLSEALSYRRNQEG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=889754 RVY87_RS20340 WP_316309006.1 4457925..4459412(+) (comM) [Alloalcanivorax xenomutans strain HF-10]
ATGAACATTACCAGCCTGCTCAGCCGCGCCAGCCGGGGCATCGATGCCGTTCCGGTAACGGTGGAAACCCATCTGGCGCC
GGGATTGCCCGGTTTCACCATTGTCGGCCTGCCGGATACCGCGGTCCGGGAGAGCCGCGACCGGGTCCGCTCGGCGCTGG
TCACCAGCGGCTTCGAGTTTCCGCAACGGCGCATCACCGTCAATCTGGCACCGGCGGACCTGCCCAAGGACGGTGGCCGT
TTCGATTTGCCCATCGCCCTGGGCATCCTGCTGGCCAGCGGCCAGTTGGGGAGAGCGGACATCGACGGCCACGAATTCAT
TGGTGAGCTGGCGCTGTCCGGCCGTCTCAATCCGGTGCCAGCCCTGTTGCCCGCCGCGCTGGCCTGCGCCAGCGCCGGCC
ATACCCTGGTGGTGCCGGCGGAGAATGCCGACGAGGCGGCGCTGGCTGGCGCCCGTACCCTGGCGGTGACCAGCCTCAAT
GATCTCTGCGCCCATCTGCGCGGCGCCACGCCCTTGCCTTGCCACCCCGCCCCGGACATCGACCGTCAATCGGTCCCGCA
TCATCCCTGCCTGGCCGATGTGCGGGGTCAGATCAGTGGCAAGCGCGTGCTGGAAATCGCCGCCGCCGGCGGCCATTCCC
TGCTACTGTGCGGCCCTCCAGGGGCCGGTAAAAGTCTGCTGGCGTCACGGCTGCCGGGCCTGCTGCCGCCACTGGACCGG
GACCAGGCTCTGGAGGTGGCGGCCGTTTACTCACTGCGCGCCAGCCGGCCGGCGGAGCACTTTCTGCAACGCCCCTACCG
CAGCCCTCATCACACCACCTCCGCCATTGCCCTGGTGGGCGGCGGCAGCCGCCCACGGCCGGGGGAAATTTCCCTGGCCC
ATCATGGCGTGCTGTTCCTTGATGAGTTGCCGGAATTCGAACGGCGCGTGCTGGAAGTCTTGCGGGAACCGCTGGAGACC
GGCGAGGTGCACATCGCCCGCACCGCCCAGCAACTGACGTTCCCTGCCCGCTTCCAGCTAGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTATCTTGGCGATCCCGAACGCGGCTGTGGCTACCGCTGTGAAAAGGCCCGCCGCTATCAGGCGCGCCTGT
CCGGGCCGCTGCTGGATCGCATTGATCTGCACCTGGACCTGCCGCCGCTGCCGGCGGCGGAACTGCTGCAAGGGCAGCCC
GGAGAGAGCAGTGAACGGGTACGCCAGCGAGTGATCGCCGCCCGCCAGCGGCAGCAGCAACGCCAGGGCCGGCTCAACCG
GGACCTGCCCGCCGACACGCTGGAAGCGATACTGGCGCCGCACCGCGCCTGGCTGATCGAGACCATGGAACGGCTTGGCC
TGTCCGCCCGCGCGCTGCACCGCAGCTTGCGGGTGGCCCGCACCATTGCCGATCTGGCGGGCGCGGACCGGGTGGACCGC
GCTCACCTGAGCGAGGCGCTCAGCTATCGGCGGAACCAGGAAGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-490)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.976

100

0.539
  comM Vibrio campbellii strain DS40M4

51.69

100

0.525
  comM Haemophilus influenzae Rd KW20

49.402

100

0.501
  comM Legionella pneumophila str. Paris

48.703

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.703

100

0.493
  comM Glaesserella parasuis strain SC1401

48.406

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.46

100

0.432