Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU45_RS00240 Genome accession   NZ_AP024873
Coordinates   51077..52600 (+) Length   507 a.a.
NCBI ID   WP_072963430.1    Uniprot ID   -
Organism   Vibrio gazogenes strain ATCC 29988     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 46077..57600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS00225 - 47696..48637 (-) 942 WP_072963424.1 branched-chain amino acid transaminase -
  OCU45_RS00230 ilvM 48651..48935 (-) 285 WP_021021460.1 acetolactate synthase 2 small subunit -
  OCU45_RS00235 ilvG 48948..50594 (-) 1647 WP_072963427.1 acetolactate synthase 2 catalytic subunit -
  OCU45_RS00240 comM 51077..52600 (+) 1524 WP_072963430.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU45_RS00245 - 52785..53663 (+) 879 WP_072963433.1 acyltransferase -
  OCU45_RS00250 - 53757..54356 (-) 600 WP_072963435.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU45_RS00255 - 54506..55492 (-) 987 WP_072963437.1 serine/threonine protein kinase -
  OCU45_RS00260 - 55624..57513 (-) 1890 WP_072963440.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55175.28 Da        Isoelectric Point: 6.8889

>NTDB_id=88974 OCU45_RS00240 WP_072963430.1 51077..52600(+) (comM) [Vibrio gazogenes strain ATCC 29988]
MGLAIIHSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIIHSRFEFPPKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIMSDHLANYEFLGELALSGQLRTVKGVLPAALAAGLADRALVVPHENGDQAALVGQEQHYSAGSL
QEVCQALCGDLSLGLHQSPPQIEQPASVRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLCDLLPEMSN
EEAMETAAVASLTQQDIHQYNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERRVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYDGQESRINPQHILRYLSRLSGPLLDRFDLSIEIPALPKGMLAEGGGR
GETTQVVRERVLRARELMLRLRGKANSLLTSREIETFCPLAKSDADFLENALHSLGLSIRAYHRIIKVARTIADLAGEEH
IQRAHLAEALGYRAMDRLLKQLTMQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=88974 OCU45_RS00240 WP_072963430.1 51077..52600(+) (comM) [Vibrio gazogenes strain ATCC 29988]
ATGGGGTTAGCAATCATTCATAGTCGGGCGAGTGTTGGTGTAGAAGCACCGTTGGTGACAGTTGAAGTACATATTAGTAA
TGGGATGCCCGGATTTACACTGGTGGGCTTACCGGAAACCACCGTCAAAGAATCACGGGATCGGGTTCGTAGTGCGATTA
TCCATTCTCGGTTTGAATTTCCGCCCAAACGCATCACTGTCAATCTGGCTCCGGCCGATTTACCGAAAGAGGGTGGCCGA
TTCGACCTGCCTATTGCTTTGGGTATTCTGGCAGCATCGGATCAAATCATGTCGGATCATCTGGCAAACTATGAGTTTTT
AGGGGAGTTAGCGTTATCCGGTCAGTTGCGAACCGTGAAAGGCGTTTTACCCGCAGCTTTGGCTGCCGGGTTGGCTGATC
GTGCTTTGGTGGTGCCGCATGAAAATGGTGATCAGGCGGCTTTAGTCGGGCAAGAACAACATTATTCTGCCGGGAGCTTG
CAAGAAGTCTGTCAGGCTTTATGCGGCGATTTGTCGCTGGGATTACATCAGTCTCCGCCACAGATTGAACAACCAGCGTC
TGTGCGGGATTTGCAGGATATTATCGGCCAGCAACAGGGTAAGCGTGCTTTAGAAATTGCCGCTGCCGGGCATCATAATT
TGCTGTTTCTCGGGCCTCCGGGAACGGGTAAAACGATGCTGGCCTCGCGGCTATGTGACTTATTGCCTGAGATGAGTAAT
GAAGAAGCGATGGAAACTGCAGCGGTTGCTTCACTGACGCAACAGGATATTCATCAGTACAACTGGAAACAGCGGCCATT
TCGAGCGCCGCATCATTCCAGTTCTATGGCTGCTTTGGTCGGTGGCGGTTCGATTCCGCGTCCCGGTGAAATTTCACTGG
CTCATAACGGATTACTCTTTCTCGATGAGATGCCGGAGTTTGAGCGTCGGGTGCTCGATTCATTACGTGAACCCTTGGAG
TCTGGGGAGATTGTCATTTCCCGGGCGCAAGGGAAGACGCGCTTCCCGGCGCGGTTTCAGTTAGTCGGGGCGTTAAATCC
AAGCCCGACAGGGTATTATGACGGTCAGGAAAGCCGGATTAATCCGCAACATATTCTTCGCTATCTGAGCCGATTATCAG
GGCCGCTATTGGATCGCTTTGACTTGTCGATCGAGATCCCTGCTTTACCGAAAGGCATGCTTGCCGAAGGTGGGGGACGG
GGAGAAACAACTCAGGTGGTTCGTGAGCGAGTGCTGCGGGCGCGTGAATTAATGCTCCGTTTACGAGGAAAAGCGAATTC
TCTTCTGACCAGCCGGGAAATTGAGACGTTCTGCCCATTGGCTAAATCTGATGCCGACTTTCTGGAAAATGCATTGCACA
GTCTAGGCCTGTCTATTCGTGCTTATCATCGCATTATTAAAGTTGCCCGGACTATTGCTGATTTGGCGGGAGAGGAACAT
ATCCAGCGGGCACATCTGGCAGAAGCGCTGGGATACCGAGCCATGGATCGATTATTGAAGCAGTTGACGATGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

82.446

100

0.824
  comM Vibrio campbellii strain DS40M4

81.854

100

0.819
  comM Haemophilus influenzae Rd KW20

64.706

100

0.651
  comM Glaesserella parasuis strain SC1401

65.217

99.803

0.651
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment