Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU28_RS11695 Genome accession   NZ_AP024871
Coordinates   2495546..2497072 (-) Length   508 a.a.
NCBI ID   WP_261816319.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2490546..2502072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS11670 - 2490573..2491394 (-) 822 WP_261816314.1 sporulation protein -
  OCU28_RS11675 - 2491879..2492145 (+) 267 WP_261816315.1 YihD family protein -
  OCU28_RS11680 ccoG 2492308..2493717 (+) 1410 WP_261816316.1 cytochrome c oxidase accessory protein CcoG -
  OCU28_RS11685 - 2493853..2494839 (+) 987 WP_261816317.1 serine/threonine protein kinase -
  OCU28_RS11690 - 2494901..2495503 (+) 603 WP_261816318.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU28_RS11695 comM 2495546..2497072 (-) 1527 WP_261816319.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU28_RS11700 ilvG 2497494..2499140 (+) 1647 WP_261816320.1 acetolactate synthase 2 catalytic subunit -
  OCU28_RS11705 ilvM 2499152..2499436 (+) 285 WP_261816321.1 acetolactate synthase 2 small subunit -
  OCU28_RS11710 ilvE 2499449..2500393 (+) 945 WP_261816322.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55002.35 Da        Isoelectric Point: 6.9576

>NTDB_id=88968 OCU28_RS11695 WP_261816319.1 2495546..2497072(-) (comM) [Vibrio gallicus strain CIP 107863]
MGLAIIQSRACMGINAPEVLVEVHIGPGMPGFHLVGLAETSVKESKDRVRSAILNSKFIFPSRKITVNLAPADLPKDGGR
FDLPIAIGILVASEQLSTEKIKQVELLGELALSGELRAVSGAIVASLACIQSHRVLISPIDNGPEVALVDTKQNLTASCL
VEVGAYLNGQQSLELNHQPITNHEQTIERDLQDILGQQQGKRALEVAAAGGHNLLFLGPPGTGKTMLATRLVDLLPNLNI
EEALQVAALNSLVGSFSLQTNWFKRPYRAPHHSSSMAALVGGGSRPKPGEISLAHNGVLFLDELPEFERRVLDSLREPIE
AGEVVISRAAGKSTFPACFQLVAALNPSPSGHYNSGQIRANPQAMLRYLSKISGPFLDRFDMSLEIPLLPIASLQQSGMR
GESTAVVRERVIEARKVMEHRVSKANAQLDSKEIEQFCCLSSSDEKFLDNAITCLGLSIRAYHRILRVSRTIADLEGSQS
ITKQHLAEALGYRAMDKLLIELNQQVSL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=88968 OCU28_RS11695 WP_261816319.1 2495546..2497072(-) (comM) [Vibrio gallicus strain CIP 107863]
ATGGGGTTAGCTATCATCCAAAGTAGGGCGTGTATGGGGATAAATGCCCCTGAAGTCTTGGTCGAGGTTCATATTGGGCC
AGGTATGCCTGGGTTTCATTTAGTCGGCTTGGCAGAAACAAGTGTAAAGGAGTCTAAGGATAGGGTTCGAAGTGCGATAC
TCAATTCAAAATTTATTTTTCCGAGTAGGAAGATAACTGTCAATTTAGCGCCTGCTGATTTACCTAAGGACGGTGGGCGT
TTCGATTTACCAATAGCCATCGGGATATTGGTGGCGAGTGAACAGTTGTCTACCGAGAAAATAAAGCAGGTTGAACTCTT
GGGTGAGCTCGCGCTGTCAGGAGAGTTGAGGGCCGTGAGTGGTGCTATCGTAGCATCATTGGCATGTATACAGAGCCATC
GTGTCCTGATTTCACCAATTGATAATGGCCCTGAGGTTGCTCTAGTTGATACCAAGCAGAACTTGACGGCAAGTTGTTTG
GTTGAGGTTGGTGCCTATTTAAATGGGCAACAAAGCCTAGAACTAAATCATCAGCCCATCACCAACCATGAACAGACTAT
TGAAAGGGACTTGCAAGATATCTTGGGACAACAGCAGGGTAAGCGTGCTCTAGAGGTCGCGGCGGCGGGAGGACATAACT
TATTATTTTTAGGCCCACCGGGAACAGGAAAAACCATGCTTGCGACACGTTTGGTTGATCTGCTTCCTAATCTCAACATA
GAAGAAGCCCTACAAGTTGCGGCGCTTAATTCCTTGGTTGGCTCGTTTAGCCTGCAAACTAATTGGTTTAAAAGGCCCTA
TCGCGCTCCACATCACTCCAGTTCGATGGCGGCCTTGGTTGGAGGCGGTTCTCGTCCTAAGCCTGGCGAGATATCTCTGG
CTCACAATGGGGTTTTATTTCTAGATGAGTTACCTGAGTTTGAACGGCGGGTGTTGGATTCGCTTCGTGAACCAATAGAG
GCCGGTGAAGTGGTTATCTCTCGAGCGGCGGGTAAGAGTACTTTTCCTGCTTGTTTTCAATTAGTAGCGGCTTTAAATCC
TAGCCCGAGTGGGCATTATAACTCCGGACAGATAAGGGCGAATCCTCAGGCCATGTTGCGCTATTTAAGTAAGATATCAG
GCCCTTTCTTAGATAGGTTTGATATGTCATTGGAGATCCCTTTGCTGCCGATAGCTAGCTTGCAGCAATCAGGTATGCGT
GGGGAAAGCACAGCGGTGGTTCGAGAACGGGTTATTGAGGCAAGAAAGGTAATGGAACATCGTGTCTCAAAAGCTAATGC
ACAGTTAGATAGCAAGGAGATTGAGCAGTTTTGTTGCTTATCGAGCAGTGATGAGAAATTCTTAGATAACGCCATTACTT
GTCTTGGACTGTCTATTCGGGCTTATCATCGGATATTGAGGGTATCTCGGACTATTGCAGACTTAGAAGGAAGCCAATCG
ATAACGAAGCAGCATCTTGCTGAGGCTTTAGGATATAGAGCGATGGATAAGTTATTAATTGAGTTGAATCAGCAAGTGTC
ACTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

65.347

99.409

0.65
  comM Vibrio cholerae strain A1552

64.356

99.409

0.64
  comM Glaesserella parasuis strain SC1401

60.672

99.606

0.604
  comM Haemophilus influenzae Rd KW20

58.974

99.803

0.589
  comM Legionella pneumophila str. Paris

49.4

98.425

0.486
  comM Legionella pneumophila strain ERS1305867

49.4

98.425

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.429

Multiple sequence alignment