Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RWA07_RS17455 Genome accession   NZ_CP136183
Coordinates   3600906..3601724 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3595906..3606724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS17440 (RWA07_17440) pilE 3596123..3596548 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RWA07_RS17445 (RWA07_17445) pilY2 3596545..3597027 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RWA07_RS17450 (RWA07_17450) pilY1 3597040..3600894 (-) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene
  RWA07_RS17455 (RWA07_17455) pilX 3600906..3601724 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWA07_RS17460 (RWA07_17460) pilW 3601721..3602722 (-) 1002 WP_002057668.1 PilW family protein Machinery gene
  RWA07_RS17465 (RWA07_17465) pilV 3602723..3603283 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RWA07_RS17470 (RWA07_17470) fimU 3603277..3603750 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWA07_RS17475 (RWA07_17475) ispH 3603920..3604870 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWA07_RS17480 (RWA07_17480) gmk 3604993..3605622 (+) 630 WP_000015937.1 guanylate kinase -
  RWA07_RS17485 (RWA07_17485) rpoZ 3605695..3605973 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWA07_RS17490 (RWA07_17490) - 3606012..3606142 (+) 131 Protein_3407 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=889672 RWA07_RS17455 WP_000149374.1 3600906..3601724(-) (pilX) [Acinetobacter baumannii strain ABO21-A001]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=889672 RWA07_RS17455 WP_000149374.1 3600906..3601724(-) (pilX) [Acinetobacter baumannii strain ABO21-A001]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993