Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RWA07_RS17470 Genome accession   NZ_CP136183
Coordinates   3603277..3603750 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3598277..3608750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS17455 (RWA07_17455) pilX 3600906..3601724 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWA07_RS17460 (RWA07_17460) pilW 3601721..3602722 (-) 1002 WP_002057668.1 PilW family protein Machinery gene
  RWA07_RS17465 (RWA07_17465) pilV 3602723..3603283 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RWA07_RS17470 (RWA07_17470) fimU 3603277..3603750 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWA07_RS17475 (RWA07_17475) ispH 3603920..3604870 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWA07_RS17480 (RWA07_17480) gmk 3604993..3605622 (+) 630 WP_000015937.1 guanylate kinase -
  RWA07_RS17485 (RWA07_17485) rpoZ 3605695..3605973 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWA07_RS17490 (RWA07_17490) - 3606012..3606142 (+) 131 Protein_3407 hypothetical protein -
  RWA07_RS17495 (RWA07_17495) - 3606182..3608287 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=889675 RWA07_RS17470 WP_001214065.1 3603277..3603750(-) (fimU) [Acinetobacter baumannii strain ABO21-A001]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=889675 RWA07_RS17470 WP_001214065.1 3603277..3603750(-) (fimU) [Acinetobacter baumannii strain ABO21-A001]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1