Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RWA07_RS17465 Genome accession   NZ_CP136183
Coordinates   3602723..3603283 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597723..3608283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS17455 (RWA07_17455) pilX 3600906..3601724 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWA07_RS17460 (RWA07_17460) pilW 3601721..3602722 (-) 1002 WP_002057668.1 PilW family protein Machinery gene
  RWA07_RS17465 (RWA07_17465) pilV 3602723..3603283 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RWA07_RS17470 (RWA07_17470) fimU 3603277..3603750 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWA07_RS17475 (RWA07_17475) ispH 3603920..3604870 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWA07_RS17480 (RWA07_17480) gmk 3604993..3605622 (+) 630 WP_000015937.1 guanylate kinase -
  RWA07_RS17485 (RWA07_17485) rpoZ 3605695..3605973 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWA07_RS17490 (RWA07_17490) - 3606012..3606142 (+) 131 Protein_3407 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=889674 RWA07_RS17465 WP_002194578.1 3602723..3603283(-) (pilV) [Acinetobacter baumannii strain ABO21-A001]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=889674 RWA07_RS17465 WP_002194578.1 3602723..3603283(-) (pilV) [Acinetobacter baumannii strain ABO21-A001]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414