Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RWA07_RS17440 Genome accession   NZ_CP136183
Coordinates   3596123..3596548 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591123..3601548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS17410 (RWA07_17410) - 3591656..3592687 (+) 1032 WP_002125597.1 lipase secretion chaperone -
  RWA07_RS17415 (RWA07_17415) - 3592802..3593743 (+) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  RWA07_RS17420 (RWA07_17420) rplS 3593795..3594163 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWA07_RS17425 (RWA07_17425) trmD 3594371..3595111 (-) 741 WP_002057664.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWA07_RS17430 (RWA07_17430) rimM 3595157..3595705 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWA07_RS17435 (RWA07_17435) rpsP 3595725..3595976 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWA07_RS17440 (RWA07_17440) pilE 3596123..3596548 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RWA07_RS17445 (RWA07_17445) pilY2 3596545..3597027 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RWA07_RS17450 (RWA07_17450) pilY1 3597040..3600894 (-) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=889669 RWA07_RS17440 WP_000788342.1 3596123..3596548(-) (pilE) [Acinetobacter baumannii strain ABO21-A001]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=889669 RWA07_RS17440 WP_000788342.1 3596123..3596548(-) (pilE) [Acinetobacter baumannii strain ABO21-A001]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518