Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RWA07_RS17445 Genome accession   NZ_CP136183
Coordinates   3596545..3597027 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591545..3602027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS17410 (RWA07_17410) - 3591656..3592687 (+) 1032 WP_002125597.1 lipase secretion chaperone -
  RWA07_RS17415 (RWA07_17415) - 3592802..3593743 (+) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  RWA07_RS17420 (RWA07_17420) rplS 3593795..3594163 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWA07_RS17425 (RWA07_17425) trmD 3594371..3595111 (-) 741 WP_002057664.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWA07_RS17430 (RWA07_17430) rimM 3595157..3595705 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWA07_RS17435 (RWA07_17435) rpsP 3595725..3595976 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWA07_RS17440 (RWA07_17440) pilE 3596123..3596548 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  RWA07_RS17445 (RWA07_17445) pilY2 3596545..3597027 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  RWA07_RS17450 (RWA07_17450) pilY1 3597040..3600894 (-) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene
  RWA07_RS17455 (RWA07_17455) pilX 3600906..3601724 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=889670 RWA07_RS17445 WP_001046417.1 3596545..3597027(-) (pilY2) [Acinetobacter baumannii strain ABO21-A001]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=889670 RWA07_RS17445 WP_001046417.1 3596545..3597027(-) (pilY2) [Acinetobacter baumannii strain ABO21-A001]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444