Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RW078_RS01690 Genome accession   NZ_CP136178
Coordinates   357563..358303 (+) Length   246 a.a.
NCBI ID   WP_272334171.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352563..363303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS01675 (RW078_01675) ponA 353150..355705 (-) 2556 WP_125564855.1 penicillin-binding protein PBP1a -
  RW078_RS01680 (RW078_01680) pilM 355867..356925 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RW078_RS01685 (RW078_01685) pilN 356925..357566 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RW078_RS01690 (RW078_01690) pilO 357563..358303 (+) 741 WP_272334171.1 type 4a pilus biogenesis protein PilO Machinery gene
  RW078_RS01695 (RW078_01695) pilP 358314..358841 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RW078_RS01700 (RW078_01700) pilQ 358904..361069 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RW078_RS01705 (RW078_01705) aroK 361081..361650 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RW078_RS01710 (RW078_01710) aroB 361679..362761 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27804.53 Da        Isoelectric Point: 4.7234

>NTDB_id=889407 RW078_RS01690 WP_272334171.1 357563..358303(+) (pilO) [Acinetobacter baumannii strain ABO21-A045]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGSPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=889407 RW078_RS01690 WP_272334171.1 357563..358303(+) (pilO) [Acinetobacter baumannii strain ABO21-A045]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATATGTAGGGGCAACAGATACATCGGAGCAAACGGGCAGCCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679