Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RW078_RS01695 Genome accession   NZ_CP136178
Coordinates   358314..358841 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353314..363841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS01680 (RW078_01680) pilM 355867..356925 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RW078_RS01685 (RW078_01685) pilN 356925..357566 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RW078_RS01690 (RW078_01690) pilO 357563..358303 (+) 741 WP_272334171.1 type 4a pilus biogenesis protein PilO Machinery gene
  RW078_RS01695 (RW078_01695) pilP 358314..358841 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RW078_RS01700 (RW078_01700) pilQ 358904..361069 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RW078_RS01705 (RW078_01705) aroK 361081..361650 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RW078_RS01710 (RW078_01710) aroB 361679..362761 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -
  RW078_RS01715 (RW078_01715) - 362777..363652 (+) 876 WP_000218808.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=889408 RW078_RS01695 WP_000695065.1 358314..358841(+) (pilP) [Acinetobacter baumannii strain ABO21-A045]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=889408 RW078_RS01695 WP_000695065.1 358314..358841(+) (pilP) [Acinetobacter baumannii strain ABO21-A045]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGA
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714