Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RW078_RS01685 Genome accession   NZ_CP136178
Coordinates   356925..357566 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351925..362566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS01665 (RW078_01665) - 351973..352305 (+) 333 WP_000169598.1 hypothetical protein -
  RW078_RS01670 (RW078_01670) - 352308..353132 (+) 825 WP_317858991.1 putative RNA methyltransferase -
  RW078_RS01675 (RW078_01675) ponA 353150..355705 (-) 2556 WP_125564855.1 penicillin-binding protein PBP1a -
  RW078_RS01680 (RW078_01680) pilM 355867..356925 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RW078_RS01685 (RW078_01685) pilN 356925..357566 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  RW078_RS01690 (RW078_01690) pilO 357563..358303 (+) 741 WP_272334171.1 type 4a pilus biogenesis protein PilO Machinery gene
  RW078_RS01695 (RW078_01695) pilP 358314..358841 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RW078_RS01700 (RW078_01700) pilQ 358904..361069 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RW078_RS01705 (RW078_01705) aroK 361081..361650 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=889406 RW078_RS01685 WP_000201227.1 356925..357566(+) (pilN) [Acinetobacter baumannii strain ABO21-A045]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=889406 RW078_RS01685 WP_000201227.1 356925..357566(+) (pilN) [Acinetobacter baumannii strain ABO21-A045]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709