Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU46_RS13760 Genome accession   NZ_AP024866
Coordinates   2978789..2980315 (-) Length   508 a.a.
NCBI ID   WP_141273309.1    Uniprot ID   A0A4Y3IU97
Organism   Vibrio comitans strain LMG 23416     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973789..2985315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS13735 - 2974160..2974426 (+) 267 WP_017243439.1 YihD family protein -
  OCU46_RS13740 ccoG 2974606..2976024 (+) 1419 WP_141273301.1 cytochrome c oxidase accessory protein CcoG -
  OCU46_RS13745 - 2976097..2977083 (+) 987 WP_141273303.1 serine/threonine protein kinase -
  OCU46_RS13750 - 2977118..2977720 (+) 603 WP_141273305.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU46_RS13755 - 2977751..2978626 (-) 876 WP_141273307.1 acyltransferase -
  OCU46_RS13760 comM 2978789..2980315 (-) 1527 WP_141273309.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU46_RS13765 ilvG 2980714..2982360 (+) 1647 WP_141273311.1 acetolactate synthase 2 catalytic subunit -
  OCU46_RS13770 ilvM 2982372..2982656 (+) 285 WP_141273313.1 acetolactate synthase 2 small subunit -
  OCU46_RS13775 ilvE 2982668..2983612 (+) 945 WP_141273315.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55220.32 Da        Isoelectric Point: 6.9710

>NTDB_id=88938 OCU46_RS13760 WP_141273309.1 2978789..2980315(-) (comM) [Vibrio comitans strain LMG 23416]
MGLAIVHSRASLGVSAPPVTVEVHIGPGMPGFHLVGLAETSVKESKDRVRSAILNSKFLFPSRKITVNLAPADLPKDGGR
FDLPIAIGILVASEQIPLEKLSDTELLGELALSGELRPVKGVISAAIASNDNRRTLITPYQNAKQVRLVDEQSNLSARSL
LQVAAYLASQQQLDLECEPELSTYSESELDMQDIIGQQQGKRALEIAAAGQHNLLFIGPPGTGKTMLASRLPDLIPPMSK
QEALEVASVASLVGSDLDSATWRKRPFRAPHHSSSMVALVGGGSFPKPGEISLAHNGILFLDELVEFEKRVLDALREPLE
AGQVAISRASGKTSFPARFQLIGALNPSPSGFYQGSQCQHTPQAILKYLGRISGPFLDRFDMSVEIPLLPLGTLSEGGDR
GETTEDCRKRVSIARETMLARANKPNALLTNKEIEWHCSLVKEDAEFLEFAIARLGLSIRAYHRIIRVARTIADLEQSES
IQKHHLSEALGYRSMDRLLRSLHQQIAG

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=88938 OCU46_RS13760 WP_141273309.1 2978789..2980315(-) (comM) [Vibrio comitans strain LMG 23416]
ATGGGACTAGCAATAGTACATAGTCGAGCAAGCTTGGGAGTGTCTGCACCACCTGTCACTGTTGAGGTGCACATAGGTCC
TGGCATGCCCGGCTTTCACCTAGTAGGGCTTGCAGAGACTAGTGTTAAAGAGTCCAAGGACAGAGTGCGAAGCGCAATTT
TGAACTCTAAGTTTTTATTTCCGAGTCGTAAAATTACCGTTAATTTAGCACCGGCGGATCTACCCAAAGATGGCGGTCGA
TTTGACCTTCCTATTGCCATAGGCATCCTAGTGGCGAGTGAACAAATCCCGTTAGAAAAGCTGAGTGATACAGAGCTGTT
GGGCGAGTTGGCTCTTTCAGGAGAACTGCGTCCGGTTAAAGGTGTTATCTCAGCGGCAATCGCGAGTAACGATAATCGGC
GAACGCTCATCACCCCCTATCAAAATGCTAAGCAGGTACGCTTGGTTGATGAACAGAGCAACCTATCAGCTCGAAGCTTA
TTGCAGGTGGCAGCGTACTTAGCCTCCCAGCAGCAACTGGATTTAGAGTGTGAGCCTGAGTTGTCCACCTATTCTGAGTC
TGAATTGGATATGCAGGACATCATAGGGCAGCAGCAAGGAAAGCGAGCTTTAGAAATAGCAGCTGCAGGGCAGCACAACC
TGCTTTTCATTGGTCCTCCGGGTACAGGAAAAACCATGCTTGCATCGCGTTTACCTGATCTCATTCCGCCTATGAGTAAG
CAAGAGGCACTGGAGGTGGCAAGTGTAGCCTCATTGGTTGGGTCCGACTTAGACAGTGCTACATGGCGAAAACGCCCTTT
TCGAGCTCCTCATCACTCTAGTTCTATGGTGGCGTTAGTCGGAGGAGGATCCTTTCCTAAGCCTGGCGAGATTTCTCTAG
CGCACAACGGTATTCTTTTTTTAGACGAGCTTGTTGAGTTTGAAAAGCGAGTGCTTGATGCTCTTCGTGAGCCATTAGAG
GCGGGGCAGGTCGCCATTTCTCGCGCATCAGGAAAAACCAGTTTCCCCGCTAGGTTTCAGCTTATCGGAGCCTTAAATCC
TAGCCCCTCAGGGTTCTATCAAGGCAGTCAGTGCCAGCATACCCCTCAGGCAATACTTAAGTATTTAGGTCGAATATCAG
GCCCATTTTTAGATCGCTTTGATATGTCTGTAGAGATCCCTTTGTTGCCATTAGGTACATTGAGTGAGGGCGGGGATCGA
GGTGAAACCACAGAGGATTGTCGCAAGAGGGTGAGCATCGCTAGAGAGACCATGCTTGCTCGTGCAAATAAGCCTAACGC
CTTGCTAACCAATAAAGAGATAGAATGGCATTGCAGTCTTGTAAAAGAGGACGCCGAGTTTCTGGAGTTTGCGATTGCCC
GTTTAGGCTTATCTATTCGAGCTTATCATCGAATTATTCGAGTGGCGCGGACCATTGCTGATTTGGAGCAGTCAGAGAGT
ATTCAAAAGCATCACCTCAGCGAAGCGCTAGGCTATCGCTCTATGGATCGGCTGTTGCGATCGCTACATCAACAAATAGC
GGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IU97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

68.119

99.409

0.677
  comM Vibrio cholerae strain A1552

67.391

99.606

0.671
  comM Glaesserella parasuis strain SC1401

61.144

99.803

0.61
  comM Haemophilus influenzae Rd KW20

59.289

99.606

0.591
  comM Legionella pneumophila str. Paris

49.899

97.835

0.488
  comM Legionella pneumophila strain ERS1305867

49.899

97.835

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.941

100

0.431

Multiple sequence alignment