Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RWV42_RS01560 Genome accession   NZ_CP136173
Coordinates   333494..334312 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328494..339312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS01525 (RWV42_01525) - 329076..329206 (-) 131 Protein_290 hypothetical protein -
  RWV42_RS01530 (RWV42_01530) rpoZ 329245..329523 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWV42_RS01535 (RWV42_01535) gmk 329596..330225 (-) 630 WP_000015937.1 guanylate kinase -
  RWV42_RS01540 (RWV42_01540) ispH 330348..331298 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWV42_RS01545 (RWV42_01545) fimU 331468..331941 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWV42_RS01550 (RWV42_01550) pilV 331935..332495 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  RWV42_RS01555 (RWV42_01555) pilW 332496..333497 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  RWV42_RS01560 (RWV42_01560) pilX 333494..334312 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWV42_RS01565 (RWV42_01565) pilY1 334324..338178 (+) 3855 WP_213068561.1 PilC/PilY family type IV pilus protein Machinery gene
  RWV42_RS01570 (RWV42_01570) pilY2 338191..338673 (+) 483 WP_114189567.1 type IV pilin protein Machinery gene
  RWV42_RS01575 (RWV42_01575) pilE 338670..339095 (+) 426 WP_114189568.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=889366 RWV42_RS01560 WP_000149374.1 333494..334312(+) (pilX) [Acinetobacter baumannii strain ABO21-A049]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=889366 RWV42_RS01560 WP_000149374.1 333494..334312(+) (pilX) [Acinetobacter baumannii strain ABO21-A049]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993