Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RWV42_RS01555 Genome accession   NZ_CP136173
Coordinates   332496..333497 (+) Length   333 a.a.
NCBI ID   WP_002132301.1    Uniprot ID   A0AAX0TUC3
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327496..338497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS01525 (RWV42_01525) - 329076..329206 (-) 131 Protein_290 hypothetical protein -
  RWV42_RS01530 (RWV42_01530) rpoZ 329245..329523 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWV42_RS01535 (RWV42_01535) gmk 329596..330225 (-) 630 WP_000015937.1 guanylate kinase -
  RWV42_RS01540 (RWV42_01540) ispH 330348..331298 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWV42_RS01545 (RWV42_01545) fimU 331468..331941 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWV42_RS01550 (RWV42_01550) pilV 331935..332495 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  RWV42_RS01555 (RWV42_01555) pilW 332496..333497 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  RWV42_RS01560 (RWV42_01560) pilX 333494..334312 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWV42_RS01565 (RWV42_01565) pilY1 334324..338178 (+) 3855 WP_213068561.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35846.52 Da        Isoelectric Point: 6.1010

>NTDB_id=889365 RWV42_RS01555 WP_002132301.1 332496..333497(+) (pilW) [Acinetobacter baumannii strain ABO21-A049]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=889365 RWV42_RS01555 WP_002132301.1 332496..333497(+) (pilW) [Acinetobacter baumannii strain ABO21-A049]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994