Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RWV42_RS01545 Genome accession   NZ_CP136173
Coordinates   331468..331941 (+) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326468..336941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS01520 (RWV42_01520) - 326931..329036 (-) 2106 WP_114189566.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RWV42_RS01525 (RWV42_01525) - 329076..329206 (-) 131 Protein_290 hypothetical protein -
  RWV42_RS01530 (RWV42_01530) rpoZ 329245..329523 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWV42_RS01535 (RWV42_01535) gmk 329596..330225 (-) 630 WP_000015937.1 guanylate kinase -
  RWV42_RS01540 (RWV42_01540) ispH 330348..331298 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWV42_RS01545 (RWV42_01545) fimU 331468..331941 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWV42_RS01550 (RWV42_01550) pilV 331935..332495 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  RWV42_RS01555 (RWV42_01555) pilW 332496..333497 (+) 1002 WP_002132301.1 PilW family protein Machinery gene
  RWV42_RS01560 (RWV42_01560) pilX 333494..334312 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=889363 RWV42_RS01545 WP_001214059.1 331468..331941(+) (fimU) [Acinetobacter baumannii strain ABO21-A049]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=889363 RWV42_RS01545 WP_001214059.1 331468..331941(+) (fimU) [Acinetobacter baumannii strain ABO21-A049]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994