Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RWV42_RS01570 Genome accession   NZ_CP136173
Coordinates   338191..338673 (+) Length   160 a.a.
NCBI ID   WP_114189567.1    Uniprot ID   A0A333U4E0
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333191..343673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS01560 (RWV42_01560) pilX 333494..334312 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWV42_RS01565 (RWV42_01565) pilY1 334324..338178 (+) 3855 WP_213068561.1 PilC/PilY family type IV pilus protein Machinery gene
  RWV42_RS01570 (RWV42_01570) pilY2 338191..338673 (+) 483 WP_114189567.1 type IV pilin protein Machinery gene
  RWV42_RS01575 (RWV42_01575) pilE 338670..339095 (+) 426 WP_114189568.1 type IV pilin protein Machinery gene
  RWV42_RS01580 (RWV42_01580) rpsP 339242..339493 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWV42_RS01585 (RWV42_01585) rimM 339513..340061 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWV42_RS01590 (RWV42_01590) trmD 340107..340847 (+) 741 WP_072618018.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWV42_RS01595 (RWV42_01595) rplS 341055..341423 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWV42_RS01600 (RWV42_01600) - 341477..342418 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RWV42_RS01605 (RWV42_01605) - 342533..343567 (-) 1035 WP_032039374.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17503.77 Da        Isoelectric Point: 8.4817

>NTDB_id=889368 RWV42_RS01570 WP_114189567.1 338191..338673(+) (pilY2) [Acinetobacter baumannii strain ABO21-A049]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=889368 RWV42_RS01570 WP_114189567.1 338191..338673(+) (pilY2) [Acinetobacter baumannii strain ABO21-A049]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A333U4E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.698

100

0.438