Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RWV42_RS01575 Genome accession   NZ_CP136173
Coordinates   338670..339095 (+) Length   141 a.a.
NCBI ID   WP_114189568.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333670..344095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS01565 (RWV42_01565) pilY1 334324..338178 (+) 3855 WP_213068561.1 PilC/PilY family type IV pilus protein Machinery gene
  RWV42_RS01570 (RWV42_01570) pilY2 338191..338673 (+) 483 WP_114189567.1 type IV pilin protein Machinery gene
  RWV42_RS01575 (RWV42_01575) pilE 338670..339095 (+) 426 WP_114189568.1 type IV pilin protein Machinery gene
  RWV42_RS01580 (RWV42_01580) rpsP 339242..339493 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWV42_RS01585 (RWV42_01585) rimM 339513..340061 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWV42_RS01590 (RWV42_01590) trmD 340107..340847 (+) 741 WP_072618018.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWV42_RS01595 (RWV42_01595) rplS 341055..341423 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWV42_RS01600 (RWV42_01600) - 341477..342418 (-) 942 WP_085943440.1 triacylglycerol lipase -
  RWV42_RS01605 (RWV42_01605) - 342533..343567 (-) 1035 WP_032039374.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15193.34 Da        Isoelectric Point: 6.9433

>NTDB_id=889369 RWV42_RS01575 WP_114189568.1 338670..339095(+) (pilE) [Acinetobacter baumannii strain ABO21-A049]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=889369 RWV42_RS01575 WP_114189568.1 338670..339095(+) (pilE) [Acinetobacter baumannii strain ABO21-A049]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

96.454

100

0.965
  comF Acinetobacter baylyi ADP1

50

99.291

0.496