Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   RWU60_RS01655 Genome accession   NZ_CP136172
Coordinates   353467..353949 (+) Length   160 a.a.
NCBI ID   WP_317857034.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348467..358949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01645 (RWU60_01645) pilX 348779..349597 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWU60_RS01650 (RWU60_01650) pilY1 349609..353454 (+) 3846 WP_317857033.1 PilC/PilY family type IV pilus protein Machinery gene
  RWU60_RS01655 (RWU60_01655) pilY2 353467..353949 (+) 483 WP_317857034.1 type IV pilin protein Machinery gene
  RWU60_RS01660 (RWU60_01660) pilE 353946..354371 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RWU60_RS01665 (RWU60_01665) rpsP 354518..354769 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWU60_RS01670 (RWU60_01670) rimM 354789..355337 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWU60_RS01675 (RWU60_01675) trmD 355383..356123 (+) 741 WP_317857035.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWU60_RS01680 (RWU60_01680) rplS 356331..356699 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWU60_RS01685 (RWU60_01685) - 356752..357693 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  RWU60_RS01690 (RWU60_01690) - 357808..358839 (-) 1032 WP_317857036.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17605.86 Da        Isoelectric Point: 8.4834

>NTDB_id=889321 RWU60_RS01655 WP_317857034.1 353467..353949(+) (pilY2) [Acinetobacter baumannii strain ABO21-A051]
MNKYSILRFNQGVTLIELMVVIVIVAIFTSIAIPSYQSYSRRATASAVKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=889321 RWU60_RS01655 WP_317857034.1 353467..353949(+) (pilY2) [Acinetobacter baumannii strain ABO21-A051]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTACTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGTTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGACTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

38.372

100

0.412