Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RWU60_RS01660 Genome accession   NZ_CP136172
Coordinates   353946..354371 (+) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348946..359371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01650 (RWU60_01650) pilY1 349609..353454 (+) 3846 WP_317857033.1 PilC/PilY family type IV pilus protein Machinery gene
  RWU60_RS01655 (RWU60_01655) pilY2 353467..353949 (+) 483 WP_317857034.1 type IV pilin protein Machinery gene
  RWU60_RS01660 (RWU60_01660) pilE 353946..354371 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RWU60_RS01665 (RWU60_01665) rpsP 354518..354769 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWU60_RS01670 (RWU60_01670) rimM 354789..355337 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWU60_RS01675 (RWU60_01675) trmD 355383..356123 (+) 741 WP_317857035.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWU60_RS01680 (RWU60_01680) rplS 356331..356699 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWU60_RS01685 (RWU60_01685) - 356752..357693 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  RWU60_RS01690 (RWU60_01690) - 357808..358839 (-) 1032 WP_317857036.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=889322 RWU60_RS01660 WP_000788337.1 353946..354371(+) (pilE) [Acinetobacter baumannii strain ABO21-A051]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=889322 RWU60_RS01660 WP_000788337.1 353946..354371(+) (pilE) [Acinetobacter baumannii strain ABO21-A051]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496