Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   RWU60_RS01650 Genome accession   NZ_CP136172
Coordinates   349609..353454 (+) Length   1281 a.a.
NCBI ID   WP_317857033.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344609..358454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01620 (RWU60_01620) gmk 344881..345510 (-) 630 WP_000015937.1 guanylate kinase -
  RWU60_RS01625 (RWU60_01625) ispH 345633..346583 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWU60_RS01630 (RWU60_01630) fimU 346753..347226 (+) 474 WP_005130734.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWU60_RS01635 (RWU60_01635) pilV 347220..347780 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RWU60_RS01640 (RWU60_01640) pilW 347781..348782 (+) 1002 WP_102760045.1 PilW family protein Machinery gene
  RWU60_RS01645 (RWU60_01645) pilX 348779..349597 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWU60_RS01650 (RWU60_01650) pilY1 349609..353454 (+) 3846 WP_317857033.1 PilC/PilY family type IV pilus protein Machinery gene
  RWU60_RS01655 (RWU60_01655) pilY2 353467..353949 (+) 483 WP_317857034.1 type IV pilin protein Machinery gene
  RWU60_RS01660 (RWU60_01660) pilE 353946..354371 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene
  RWU60_RS01665 (RWU60_01665) rpsP 354518..354769 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  RWU60_RS01670 (RWU60_01670) rimM 354789..355337 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  RWU60_RS01675 (RWU60_01675) trmD 355383..356123 (+) 741 WP_317857035.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RWU60_RS01680 (RWU60_01680) rplS 356331..356699 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  RWU60_RS01685 (RWU60_01685) - 356752..357693 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 137619.27 Da        Isoelectric Point: 7.7527

>NTDB_id=889320 RWU60_RS01650 WP_317857033.1 349609..353454(+) (pilY1) [Acinetobacter baumannii strain ABO21-A051]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTSNSYGENRLAMLKDGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVVNLKSGGTTPSAHAYAEAAAYLM
GTTTYSETNYAIRKESYIKRVRRFDNKTEYSSCTNSSQIDINTLSQSCRSNGWSSWTTFNPGVNTLTDYETSSDWTYYYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSAS
VMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSDRKGDDACSPNQSTNAVVAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYL
RAFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVPLPI
AGQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAVPPEGTNPFDTVANTASYVLGKFDP
STGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILY
GTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTTKQM
NIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNITLT
DACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLNNNQ
TKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGRE
GMTPASALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSL
SSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNPDGTINS
NKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQLSGNENGTGEWQCTSHLLPVRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=889320 RWU60_RS01650 WP_317857033.1 349609..353454(+) (pilY1) [Acinetobacter baumannii strain ABO21-A051]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAAGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAGCAATAGTTATGGTGAAAACCGTTTGGCTATGCTTAAAGATGGTATGAATGCT
TTTTTAGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGATAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCCCCTTTAGGAGATGCGAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGTTAATTTAAAATCAGGGGGCACGACACCTTCAGCCCATGCTTATGCTGAAGCAGCTGCTTACTTAATG
GGAACAACCACATATTCAGAAACGAATTATGCTATTCGTAAAGAGAGTTATATTAAACGTGTAAGAAGATTTGATAATAA
AACTGAATACTCTTCTTGCACTAATTCTTCACAAATTGATATTAATACCTTAAGTCAATCATGTCGTTCTAATGGCTGGA
GTAGCTGGACCACGTTCAATCCAGGAGTAAATACATTAACAGATTATGAGACTTCATCTGACTGGACTTATTACTATACT
TATTACTACACCACTTTTAATTATGCTGTGGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGATACAGCTAG
CAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAGTAGCGAATC
GCCAGAGTTGTGATGGACAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGTTCGGCAAGT
GTCATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTACGGCAGACTC
TGGTTGGGCTTGTATGGGGGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAATCCTGCCGGAGTTTCTATTCAAACAG
CATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGTTCGAGAACC
CAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGTTGCACCAGGTTATGGGAATGG
TGGTTTTTTCCCTACTCAGAGTTCACAAGGCGTAACAGACAGCGTTATCGCATTTATTAATAATTTAGATAAAGTTCCTT
TAGAACCCTTAACCACAGGTGCTATCTCAGTTCCATATGATGCATTGAATCCCAAAAATTTACAGGAATATGGTTACTTA
CGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCTGG
AGCGAATGCAGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGGACTGGAACAAAGG
ATTATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCTTTACCCATT
GCTGGGCAACCTGAAACACGTGATGCAGAAGGAAATATCACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTT
ATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTGTTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCA
TCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGA
TATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTT
TACCGGTTCAACTAACCTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTAT
GGAACCATGGAAGGCGGGTTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTT
AAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGGACGGAGCTT
GGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTACAAAGCAAATG
AATATTTATGGCGGCATGCGCATGGGGGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACCGAAACTGCT
TTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTATGGGGCAAAGCTGGTCTAAACCCGTACTCGCGAACATCCGTT
ATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATTACGTTGACT
GACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCTGTCTATATTATTGACGCAAAAACTGGTCAGCGTTTGTGGTG
GACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTAGACCGTG
ATGCTGATGGCTTAGTTGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTGGACCTTAATAATAATCAG
ACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGATTCAACTTA
TGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCTCCAACAGTAACGATCCACGATTATGGAA
TTCACACTTTTATTACAGTAGGAATCGCATCAGGAGACCGTAGTACACCGTTAGATGTTTACCCACTCACAGGTCGTGAA
GGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAGAGACTTTGTTAAAAA
GAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGCTTAAGAAAAAATCCACAAATTC
TAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCAACTACAGGAGTAGGTAAAGGTGGTTGGTATCGTTCGCTT
TCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGAGGAACCAAT
GGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTTGTCTACCTC
GTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCA
AATAAAGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGT
CATCGGTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGGAAATTAC
AGCTGTCTGGAAACGAGAACGGAACAGGTGAGTGGCAATGTACAAGTCATTTACTTCCTGTGCGCTGGTATGAGCGCTAT
CGCTAG

Domains

Predicted by InterproScan.

von Willebrand factor type A domain (VWA_2)

(51-102)

Neisseria PilC beta-propeller domain (T4P_PilY1)

(712-961)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

88.578

100

0.89