Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RWU60_RS01630 Genome accession   NZ_CP136172
Coordinates   346753..347226 (+) Length   157 a.a.
NCBI ID   WP_005130734.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341753..352226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01605 (RWU60_01605) - 342216..344321 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  RWU60_RS01610 (RWU60_01610) - 344361..344491 (-) 131 Protein_307 hypothetical protein -
  RWU60_RS01615 (RWU60_01615) rpoZ 344530..344808 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWU60_RS01620 (RWU60_01620) gmk 344881..345510 (-) 630 WP_000015937.1 guanylate kinase -
  RWU60_RS01625 (RWU60_01625) ispH 345633..346583 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWU60_RS01630 (RWU60_01630) fimU 346753..347226 (+) 474 WP_005130734.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWU60_RS01635 (RWU60_01635) pilV 347220..347780 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RWU60_RS01640 (RWU60_01640) pilW 347781..348782 (+) 1002 WP_102760045.1 PilW family protein Machinery gene
  RWU60_RS01645 (RWU60_01645) pilX 348779..349597 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=889316 RWU60_RS01630 WP_005130734.1 346753..347226(+) (fimU) [Acinetobacter baumannii strain ABO21-A051]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIGADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=889316 RWU60_RS01630 WP_005130734.1 346753..347226(+) (fimU) [Acinetobacter baumannii strain ABO21-A051]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGGCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994