Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RWU60_RS01645 Genome accession   NZ_CP136172
Coordinates   348779..349597 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343779..354597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS01610 (RWU60_01610) - 344361..344491 (-) 131 Protein_307 hypothetical protein -
  RWU60_RS01615 (RWU60_01615) rpoZ 344530..344808 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RWU60_RS01620 (RWU60_01620) gmk 344881..345510 (-) 630 WP_000015937.1 guanylate kinase -
  RWU60_RS01625 (RWU60_01625) ispH 345633..346583 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RWU60_RS01630 (RWU60_01630) fimU 346753..347226 (+) 474 WP_005130734.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  RWU60_RS01635 (RWU60_01635) pilV 347220..347780 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RWU60_RS01640 (RWU60_01640) pilW 347781..348782 (+) 1002 WP_102760045.1 PilW family protein Machinery gene
  RWU60_RS01645 (RWU60_01645) pilX 348779..349597 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RWU60_RS01650 (RWU60_01650) pilY1 349609..353454 (+) 3846 WP_317857033.1 PilC/PilY family type IV pilus protein Machinery gene
  RWU60_RS01655 (RWU60_01655) pilY2 353467..353949 (+) 483 WP_317857034.1 type IV pilin protein Machinery gene
  RWU60_RS01660 (RWU60_01660) pilE 353946..354371 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=889319 RWU60_RS01645 WP_000149374.1 348779..349597(+) (pilX) [Acinetobacter baumannii strain ABO21-A051]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=889319 RWU60_RS01645 WP_000149374.1 348779..349597(+) (pilX) [Acinetobacter baumannii strain ABO21-A051]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCCGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTTTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGACTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993