Detailed information NTG0888805

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RND74_RS20055
• Genome accession: NZ_CP136135
• Coordinates: 4422615..4424141 (+)
• Length: 508 a.a.
• NCBI ID: WP_014916972.1
• Uniprot ID: -
• Organism: Pectobacterium brasiliense strain ZRIMU1702DQ
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 4417615..4429141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RND74_RS20035	-	4419071..4419997 (-)	927	WP_014916970.1	branched-chain amino acid transaminase	-
RND74_RS20040	ilvM	4420023..4420283 (-)	261	WP_010294673.1	acetolactate synthase 2 small subunit	-
RND74_RS20045	ilvG	4420322..4421968 (-)	1647	WP_039286279.1	acetolactate synthase 2 catalytic subunit	-
RND74_RS20050	ilvL	4422109..4422207 (-)	99	WP_071531109.1	ilv operon leader peptide	-
RND74_RS20055	comM	4422615..4424141 (+)	1527	WP_014916972.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
RND74_RS20060	-	4424199..4424537 (-)	339	WP_010283921.1	DUF413 domain-containing protein	-
RND74_RS20065	hdfR	4424658..4425485 (+)	828	WP_406641831.1	HTH-type transcriptional regulator HdfR	-
RND74_RS20070	yjfF	4425507..4426469 (-)	963	WP_116227386.1	galactofuranose ABC transporter, permease protein YjfF	-
RND74_RS20075	ytfT	4426469..4427479 (-)	1011	WP_010283927.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
RND74_RS20080	ytfR	4427469..4428986 (-)	1518	WP_406641833.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55498.18 Da
• Isoelectric Point: 6.6907

>NTDB_id=888805 RND74_RS20055 WP_014916972.1 4422615..4424141(+) (comM) [Pectobacterium brasiliense strain ZRIMU1702DQ]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide

• Length: 1527 bp

>NTDB_id=888805 RND74_RS20055 WP_014916972.1 4422615..4424141(+) (comM) [Pectobacterium brasiliense strain ZRIMU1702DQ]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATCAAATCAGGCC
GCCAGCTTATCCTTCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCTGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTATTGCTAGGGCCTCCGGGAACGGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGTGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAATCTGGGGAAATTATCATTTCCCGCACTCGGGCTAAAGTATGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGCGTTCATAACCGGTTGCCAGCACAACAAATACTGCGCTACCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTCGCGCGCACGATCGCTGACCTCGGAGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.229	99.606	0.64
comM	Vibrio cholerae strain A1552	64.215	99.016	0.636
comM	Glaesserella parasuis strain SC1401	63.261	100	0.634
comM	Vibrio campbellii strain DS40M4	62.846	99.606	0.626
comM	Legionella pneumophila str. Paris	50.701	98.228	0.498
comM	Legionella pneumophila strain ERS1305867	50.701	98.228	0.498
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.214	100	0.469