Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RND74_RS17445 Genome accession   NZ_CP136135
Coordinates   3845153..3845695 (+) Length   180 a.a.
NCBI ID   WP_406641437.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain ZRIMU1702DQ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3840153..3850695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND74_RS17435 - 3841641..3842060 (-) 420 WP_406641435.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RND74_RS17440 uvrA 3842077..3844903 (-) 2827 Protein_3405 excinuclease ABC subunit UvrA -
  RND74_RS17445 ssb 3845153..3845695 (+) 543 WP_406641437.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RND74_RS17450 - 3845851..3846465 (-) 615 WP_406641438.1 hypothetical protein -
  RND74_RS17455 - 3846707..3847165 (+) 459 WP_205544890.1 GNAT family N-acetyltransferase -
  RND74_RS17460 - 3847227..3847817 (+) 591 WP_406641440.1 hypothetical protein -
  RND74_RS17465 - 3847826..3848863 (-) 1038 WP_406641442.1 LacI family DNA-binding transcriptional regulator -
  RND74_RS17470 - 3848863..3849915 (-) 1053 WP_039483648.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19142.10 Da        Isoelectric Point: 5.2456

>NTDB_id=888801 RND74_RS17445 WP_406641437.1 3845153..3845695(+) (ssb) [Pectobacterium brasiliense strain ZRIMU1702DQ]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQNNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=888801 RND74_RS17445 WP_406641437.1 3845153..3845695(+) (ssb) [Pectobacterium brasiliense strain ZRIMU1702DQ]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAGCGCCCGGCACAG
AACAGCGCTCCAGCGCAAAACAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.313

99.444

0.361