Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV29_RS17510 Genome accession   NZ_AP024861
Coordinates   3904557..3906080 (-) Length   507 a.a.
NCBI ID   WP_073606081.1    Uniprot ID   A0A1M6EPF9
Organism   Vibrio aerogenes strain LMG 19650     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3899557..3911080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS17485 - 3901093..3901266 (+) 174 WP_175561612.1 hypothetical protein -
  OCV29_RS17490 - 3901428..3901694 (+) 267 WP_073606101.1 YihD family protein -
  OCV29_RS17495 - 3901777..3902757 (+) 981 WP_073606084.1 serine/threonine protein kinase -
  OCV29_RS17500 - 3902791..3903390 (+) 600 WP_073606083.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV29_RS17505 - 3903520..3904407 (-) 888 WP_073606082.1 acyltransferase -
  OCV29_RS17510 comM 3904557..3906080 (-) 1524 WP_073606081.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV29_RS17515 ilvG 3906589..3908235 (+) 1647 WP_073606080.1 acetolactate synthase 2 catalytic subunit -
  OCV29_RS17520 ilvM 3908249..3908533 (+) 285 WP_073606079.1 acetolactate synthase 2 small subunit -
  OCV29_RS17525 ilvD 3908657..3910498 (+) 1842 WP_073606099.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55364.59 Da        Isoelectric Point: 7.0477

>NTDB_id=88880 OCV29_RS17510 WP_073606081.1 3904557..3906080(-) (comM) [Vibrio aerogenes strain LMG 19650]
MGLAVIYSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIIHSRFEFPPKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIISEDIEHYEFLGELALSGVLRSVKGVLPAALAAGKDERCLIIPDENGDQAALVGKHRHLSARSL
LEVCQALCGETALSLNQSPHRLSEESSHRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLCDLIPDMTN
EEALETAAVASLTQQEIHQYNWKKRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSLSGCYEPESVHVNPQHILRYLSRISGPLLDRFDLSVEIPALPKGMLSNGGGR
GESTLTVRSRVIQARKIMMARSNKANALLSNQEIEKFCVLEHEDAEFLENALHHLGLSVRAYHRIIKVARTIADLAGDEK
ISRQHLAEALGYRAMDRLLKQLTAMSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=88880 OCV29_RS17510 WP_073606081.1 3904557..3906080(-) (comM) [Vibrio aerogenes strain LMG 19650]
ATGGGATTAGCTGTGATTTATAGTCGTGCAAGTGTTGGTGTTGAAGCTCCTTTAGTGACTGTGGAGGTTCATATCAGTAA
TGGCATGCCTGGATTTACACTGGTAGGTTTACCTGAAACGACTGTCAAAGAATCCAGAGATCGTGTTCGTAGTGCCATTA
TTCATTCTCGTTTTGAATTTCCGCCAAAACGTATCACGGTCAACCTGGCTCCGGCAGATCTACCAAAAGAAGGCGGCAGA
TTTGATTTACCTATTGCTTTGGGAATTCTTGCTGCATCAGAGCAAATTATCTCTGAAGATATAGAGCACTATGAATTTCT
GGGGGAGCTGGCATTATCTGGTGTACTCCGGTCCGTGAAAGGTGTATTACCCGCAGCATTAGCTGCAGGTAAAGATGAAC
GTTGTCTGATCATTCCTGATGAGAATGGTGATCAGGCTGCACTGGTTGGAAAACATCGTCATTTATCTGCCCGAAGCTTG
TTGGAAGTTTGTCAGGCGCTTTGTGGTGAAACGGCCCTTTCATTAAATCAGTCACCTCACCGTTTATCTGAAGAGAGTTC
ACACCGGGATTTACAGGATATTATTGGTCAGCAGCAGGGAAAACGAGCTTTGGAGATTGCTGCAGCTGGACACCATAATT
TATTGTTTCTTGGACCTCCGGGAACCGGAAAGACGATGCTTGCATCAAGGTTGTGTGATTTGATACCTGATATGACCAAT
GAAGAAGCTTTGGAAACCGCTGCGGTTGCATCACTTACTCAGCAAGAAATACATCAGTATAACTGGAAGAAACGTCCATT
CAGAGCACCACATCATTCAAGCTCAATGGCAGCTCTTGTCGGAGGCGGGTCTGTGCCGCGCCCCGGGGAAATTTCTCTGG
CACATAATGGGCTTTTATTTCTGGATGAGATGCCCGAATTTGAACGTAAAGTGCTTGATTCATTGCGTGAACCTTTGGAA
TCTGGAGAGATAATTATTTCACGGGCACAGGGGAAAACCCGCTTTCCGGCAAGATTCCAGTTGGTTGGGGCATTAAATCC
AAGTCTCTCGGGGTGTTATGAGCCAGAAAGTGTGCATGTTAATCCTCAGCATATACTACGTTATTTGAGTCGAATTTCCG
GACCTTTGCTTGACCGCTTTGATTTATCAGTTGAAATTCCTGCTTTACCTAAAGGTATGTTGTCAAATGGCGGGGGACGG
GGAGAGTCGACTTTGACTGTTCGTAGTCGTGTGATACAGGCTCGAAAGATTATGATGGCACGAAGTAATAAAGCGAATGC
ATTATTGTCGAATCAGGAAATAGAAAAATTTTGTGTGCTTGAACATGAAGATGCAGAGTTTCTTGAAAATGCTTTACATC
ATTTAGGATTATCTGTTCGTGCATATCACCGGATTATTAAAGTTGCCAGAACCATTGCCGACTTAGCCGGTGACGAAAAA
ATATCCCGTCAACATCTGGCTGAAGCGCTTGGATACAGAGCCATGGATCGTCTGTTAAAACAATTAACAGCAATGAGTGT
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M6EPF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

79.29

100

0.793
  comM Vibrio campbellii strain DS40M4

78.304

100

0.783
  comM Haemophilus influenzae Rd KW20

63.333

100

0.637
  comM Glaesserella parasuis strain SC1401

62.353

100

0.627
  comM Legionella pneumophila str. Paris

50.101

98.028

0.491
  comM Legionella pneumophila strain ERS1305867

50.101

98.028

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.444

Multiple sequence alignment