Detailed information NTG0888782

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RND66_RS20625
• Genome accession: NZ_CP136134
• Coordinates: 4653192..4654718 (+)
• Length: 508 a.a.
• NCBI ID: WP_014916972.1
• Uniprot ID: -
• Organism: Pectobacterium brasiliense strain ZRIMU1701SM
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 4648192..4659718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RND66_RS20605	-	4649609..4650535 (-)	927	WP_014916970.1	branched-chain amino acid transaminase	-
RND66_RS20610	ilvM	4650561..4650821 (-)	261	WP_010294673.1	acetolactate synthase 2 small subunit	-
RND66_RS20615	ilvG	4650899..4652545 (-)	1647	WP_039555967.1	acetolactate synthase 2 catalytic subunit	-
RND66_RS20620	ilvL	4652686..4652784 (-)	99	WP_071531109.1	ilv operon leader peptide	-
RND66_RS20625	comM	4653192..4654718 (+)	1527	WP_014916972.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
RND66_RS20630	-	4654776..4655114 (-)	339	WP_010283921.1	DUF413 domain-containing protein	-
RND66_RS20635	hdfR	4655235..4656062 (+)	828	WP_010294681.1	HTH-type transcriptional regulator HdfR	-
RND66_RS20640	yjfF	4656084..4657046 (-)	963	WP_010294682.1	galactofuranose ABC transporter, permease protein YjfF	-
RND66_RS20645	ytfT	4657046..4658056 (-)	1011	WP_010283927.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
RND66_RS20650	ytfR	4658046..4659563 (-)	1518	WP_014916975.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55498.18 Da
• Isoelectric Point: 6.6907

>NTDB_id=888782 RND66_RS20625 WP_014916972.1 4653192..4654718(+) (comM) [Pectobacterium brasiliense strain ZRIMU1701SM]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide

• Length: 1527 bp

>NTDB_id=888782 RND66_RS20625 WP_014916972.1 4653192..4654718(+) (comM) [Pectobacterium brasiliense strain ZRIMU1701SM]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCATATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAGGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTCTTGCTAGGGCCTCCGGGAACGGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTATGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
TCCCAGCCCCTCAGGACACTATCAGGGTGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTACTCACTTCACGTGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATCTTGAAAGTTGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACATCTTGCCGAAGCTCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.229	99.606	0.64
comM	Vibrio cholerae strain A1552	64.215	99.016	0.636
comM	Glaesserella parasuis strain SC1401	63.261	100	0.634
comM	Vibrio campbellii strain DS40M4	62.846	99.606	0.626
comM	Legionella pneumophila str. Paris	50.701	98.228	0.498
comM	Legionella pneumophila strain ERS1305867	50.701	98.228	0.498
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.214	100	0.469