Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   RWA16_RS07400 Genome accession   NZ_CP136128
Coordinates   1583107..1584348 (-) Length   413 a.a.
NCBI ID   WP_087912227.1    Uniprot ID   A0AAN1C8E1
Organism   Lacticaseibacillus casei strain LMG 24099     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578107..1589348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA16_RS07395 (RWA16_07395) - 1581353..1583083 (-) 1731 WP_087912226.1 proline--tRNA ligase -
  RWA16_RS07400 (RWA16_07400) eeP 1583107..1584348 (-) 1242 WP_087912227.1 RIP metalloprotease RseP Regulator
  RWA16_RS07405 (RWA16_07405) - 1584365..1585153 (-) 789 WP_316059299.1 phosphatidate cytidylyltransferase -
  RWA16_RS07410 (RWA16_07410) - 1585189..1585941 (-) 753 WP_087912228.1 isoprenyl transferase -
  RWA16_RS07415 (RWA16_07415) frr 1586630..1587187 (-) 558 WP_010488081.1 ribosome recycling factor -
  RWA16_RS07420 (RWA16_07420) pyrH 1587187..1587906 (-) 720 WP_010488080.1 UMP kinase -
  RWA16_RS07425 (RWA16_07425) tsf 1588131..1589012 (-) 882 WP_087912229.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45350.02 Da        Isoelectric Point: 8.0451

>NTDB_id=888747 RWA16_RS07400 WP_087912227.1 1583107..1584348(-) (eeP) [Lacticaseibacillus casei strain LMG 24099]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDDEDDIKPG
TMLSLILNDAGKVVRINASDKTTLEGGMPVQVSRVDLVKDLVIEGYPNGDEETLQSWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFILAILTFIIYGLIFGVQILNTNQVGTVLPDYPAAQAGLKSNARVESIDGKKIHSFTDL
SNQVSKHAGKSVMFTVKQDGKTQNIAIKPDKKGKIGVMVPVEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLAGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=888747 RWA16_RS07400 WP_087912227.1 1583107..1584348(-) (eeP) [Lacticaseibacillus casei strain LMG 24099]
ATGACCACAATCATTGCTTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTCTACTTTGCAAA
ACGCAGCGGTATTCTGGTGCGTGAATTTTCGATTGGCATGGGTCCAAAGCTTTGGGCGTCACATAAGAATAATACGACCT
ACACATTGCGCCTGTTGCCACTGGGCGGTTATGTGCGTATGGCAGGCTGGCAGGATGATGAAGATGATATCAAACCAGGC
ACGATGCTGAGCTTGATTTTGAACGATGCCGGTAAAGTTGTCCGCATTAATGCCAGTGACAAAACAACATTAGAAGGCGG
CATGCCGGTTCAGGTCAGTCGCGTCGATTTGGTCAAGGACCTTGTCATCGAAGGTTATCCGAATGGTGATGAAGAGACCT
TGCAAAGTTGGCAGGTTGATCATGACGCCACTATCATCGAAGAAGATGGCACAGAAGTCCAGATTGCGCCGGAAGACGTG
CAATTTCAAAATGCACCGGTTTGGCGGCGGCTCTTGGTCAATTTTGCCGGACCGATGAATAACTTTATTCTCGCTATTTT
GACGTTCATTATTTATGGTCTGATTTTTGGCGTGCAGATTTTGAATACTAATCAGGTTGGAACCGTTCTTCCCGACTACC
CGGCTGCCCAAGCAGGACTTAAATCGAATGCTAGGGTTGAATCCATCGATGGTAAGAAGATTCATTCATTTACGGATCTT
TCGAATCAGGTCAGCAAACATGCCGGCAAATCAGTCATGTTTACTGTCAAGCAGGATGGCAAAACACAAAATATTGCGAT
TAAACCGGATAAGAAAGGTAAGATTGGCGTGATGGTGCCCGTTGAGAAGTCACCGGCGCGCGCCTTTACTTATGGGTTTA
CCCAAACATGGGATCTAGCTGTTCGTACCTGGGACGTCTTGAAGTCAATGGTCACTGGCGGTTTTTCACTTAATAAGCTC
GCCGGGCCGGTTGGCATTTATACCATGACCAGCCAAAGTGCTAAAGGCGGGCTTGCCGGCTTGTTGTTTTTCATGGGTTA
CCTAAGCCTTGGTTTGGGCATTTCCAACCTATTGCCGATTCCGGTCTTGGACGGCGGGAAAATTCTATTAAACCTGATCG
AAATCATTCGGCGCAAACCACTCAAACCGGAAACTGAAGGTGTGGTCACGATGATCGGTCTGGGTTTGATGGTCTTGTTG
ATGCTCGCCGTCACGATTAATGACATTATGCGTTACTTTTAA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.061

100

0.506
  eeP Streptococcus thermophilus LMD-9

48.941

100

0.504