Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV29_RS02390 Genome accession   NZ_AP024861
Coordinates   533651..534184 (+) Length   177 a.a.
NCBI ID   WP_073603565.1    Uniprot ID   A0A1M5YN83
Organism   Vibrio aerogenes strain LMG 19650     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 528651..539184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS02375 uvrA 528784..531606 (-) 2823 WP_073603568.1 excinuclease ABC subunit UvrA -
  OCV29_RS02380 galU 531749..532621 (-) 873 WP_073603567.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV29_RS02385 qstR 532741..533388 (-) 648 WP_073603566.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV29_RS02390 ssb 533651..534184 (+) 534 WP_073603565.1 single-stranded DNA-binding protein Machinery gene
  OCV29_RS02395 - 534666..535214 (+) 549 WP_073603563.1 4Fe-4S dicluster domain-containing protein -
  OCV29_RS02400 fdhF 535241..537385 (+) 2145 WP_073603562.1 formate dehydrogenase subunit alpha -
  OCV29_RS02405 - 537489..539144 (+) 1656 WP_261887360.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19571.74 Da        Isoelectric Point: 5.2358

>NTDB_id=88865 OCV29_RS02390 WP_073603565.1 533651..534184(+) (ssb) [Vibrio aerogenes strain LMG 19650]
MASRGVNKVILVGNLGGDPEVRYMPNGGAVANITIATSESWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGAGQPGMQPQSAPQQGGWGQPQQPAMQQPQQQSAPQKPQQQ
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=88865 OCV29_RS02390 WP_073603565.1 533651..534184(+) (ssb) [Vibrio aerogenes strain LMG 19650]
ATGGCCAGCCGTGGAGTAAACAAAGTCATCTTAGTGGGTAACCTTGGCGGGGATCCTGAAGTTCGTTATATGCCGAATGG
CGGTGCCGTTGCAAACATTACGATTGCAACGTCTGAGTCATGGCGTGATAAAACAACGGGCGAACAAAGAGAAAAAACAG
AGTGGCACCGGGTTGCTTTGTTTGGAAAACTGGCCGAAGTCGCTGGTGAATACCTGCGTAAAGGTTCTCAGGTGTATATT
GAAGGACAACTGCAGACACGTAAGTGGCAGGATCAAAGTGGTCAGGATCGTTATACCACTGAAGTTGTGGTACAAGGGTT
CAATGGTGTGATGCAAATGTTGGGAGGTCGCGCTCAGGGTGCAGGTCAACCAGGTATGCAGCCACAATCAGCACCACAAC
AAGGTGGATGGGGGCAACCTCAACAGCCTGCAATGCAGCAGCCTCAGCAGCAATCCGCCCCCCAAAAGCCACAACAGCAA
CAGCCTCAATATAATGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5YN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.24

100

0.842
  ssb Glaesserella parasuis strain SC1401

54.396

100

0.559
  ssb Neisseria meningitidis MC58

45.946

100

0.48
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.48

Multiple sequence alignment