Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV29_RS02385 Genome accession   NZ_AP024861
Coordinates   532741..533388 (-) Length   215 a.a.
NCBI ID   WP_073603566.1    Uniprot ID   -
Organism   Vibrio aerogenes strain LMG 19650     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 527741..538388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV29_RS02375 uvrA 528784..531606 (-) 2823 WP_073603568.1 excinuclease ABC subunit UvrA -
  OCV29_RS02380 galU 531749..532621 (-) 873 WP_073603567.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV29_RS02385 qstR 532741..533388 (-) 648 WP_073603566.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV29_RS02390 ssb 533651..534184 (+) 534 WP_073603565.1 single-stranded DNA-binding protein Machinery gene
  OCV29_RS02395 - 534666..535214 (+) 549 WP_073603563.1 4Fe-4S dicluster domain-containing protein -
  OCV29_RS02400 fdhF 535241..537385 (+) 2145 WP_073603562.1 formate dehydrogenase subunit alpha -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25006.81 Da        Isoelectric Point: 9.6579

>NTDB_id=88864 OCV29_RS02385 WP_073603566.1 532741..533388(-) (qstR) [Vibrio aerogenes strain LMG 19650]
MSKNNYARTLYILYPEGEKLPGIYEEIENFLGYTLPRITPEALLVSGTKDRHKILIFTYHHRISLLPCIHDGYSRQQHYE
TVVLNVEQRLNTEALLALGNLKGLFYQNDSVQKIIMGLREIIAGRNWLPRHISSQLLHYYRYALHHHNVSAIISLTAREI
EILRCLQSGARNTEIADNLFISEYTVKSHLHQIFKKISVKNRAQAISWARQNLQT

Nucleotide


Download         Length: 648 bp        

>NTDB_id=88864 OCV29_RS02385 WP_073603566.1 532741..533388(-) (qstR) [Vibrio aerogenes strain LMG 19650]
ATGAGCAAAAACAATTATGCCCGGACACTTTACATCCTGTATCCAGAGGGAGAAAAACTTCCGGGCATATACGAAGAGAT
AGAAAACTTTCTGGGATATACGTTACCCAGAATCACTCCGGAAGCCCTGTTGGTCAGTGGCACAAAGGATCGGCACAAAA
TTTTGATTTTTACGTATCATCACCGGATATCACTGCTTCCCTGTATTCATGACGGGTATAGCAGACAACAACACTACGAA
ACCGTTGTACTTAATGTTGAGCAACGATTAAACACCGAAGCATTATTAGCATTAGGAAACCTGAAAGGGCTGTTTTATCA
AAATGATTCTGTACAAAAAATCATTATGGGACTCCGGGAAATCATCGCAGGGAGGAACTGGCTTCCACGGCATATCTCCA
GTCAGTTGCTTCATTATTATCGCTATGCACTGCATCACCATAATGTGTCAGCCATCATCTCACTCACTGCAAGAGAAATT
GAAATTTTGCGCTGTTTGCAATCCGGCGCCCGTAACACTGAAATTGCAGACAACCTGTTTATCAGCGAATATACAGTTAA
ATCTCATTTACATCAGATATTTAAAAAGATATCGGTTAAAAACAGAGCTCAGGCAATTTCATGGGCCAGACAAAATCTTC
AGACCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

54.709

100

0.567
  qstR Vibrio campbellii strain DS40M4

46.977

100

0.47
  qstR Vibrio parahaemolyticus RIMD 2210633

46.047

100

0.46

Multiple sequence alignment