Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OC457_RS13945 Genome accession   NZ_AP024854
Coordinates   2972551..2974083 (-) Length   510 a.a.
NCBI ID   WP_080176169.1    Uniprot ID   A0A1T4UN14
Organism   Photobacterium toruni strain CECT 9189     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2967551..2979083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC457_RS13915 - 2968217..2968876 (-) 660 WP_080176163.1 hemolysin III family protein -
  OC457_RS13920 - 2969031..2969708 (-) 678 WP_080176164.1 FadR/GntR family transcriptional regulator -
  OC457_RS13925 - 2970033..2970233 (+) 201 WP_080176165.1 hypothetical protein -
  OC457_RS13930 - 2970391..2970657 (+) 267 WP_080176166.1 YihD family protein -
  OC457_RS13935 - 2970824..2971810 (+) 987 WP_080176167.1 serine/threonine protein kinase -
  OC457_RS13940 - 2971888..2972490 (+) 603 WP_080176168.1 thiol:disulfide interchange protein DsbA/DsbL -
  OC457_RS13945 comM 2972551..2974083 (-) 1533 WP_080176169.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OC457_RS13950 ilvG 2974476..2976122 (+) 1647 WP_080176170.1 acetolactate synthase 2 catalytic subunit -
  OC457_RS13955 ilvM 2976125..2976379 (+) 255 WP_045029730.1 acetolactate synthase 2 small subunit -
  OC457_RS13960 ilvE 2976394..2977326 (+) 933 WP_080176171.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55459.92 Da        Isoelectric Point: 9.2317

>NTDB_id=88855 OC457_RS13945 WP_080176169.1 2972551..2974083(-) (comM) [Photobacterium toruni strain CECT 9189]
MTLAIVHSRACVGVEAPPVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIINAQFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPSDRLAQHEFIGELALSGDLRPVKGALPAALAALNAKRCLIVPDKNGDQVALVAEKQHKSAPSL
LAVCGFLCGQQQLQLHRQPRSKAPSTIINEQRDMQDIIGQQQGKRALEIAAAGSHNLLLLGPPGTGKTMLASRLRDLLPP
MTHQEAIETAAVASLTQQSLHHGNWLNRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLRE
PLESGQIVISRATAKTTFPARFQLIGALNPSPTGYYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSLEIPALPRGTLTTG
GDRGEPSSIIKARVDQARERMLARCGKVNALLSTRELDKHCELSFKDAEFLENALHQLGLSVRAYHRIIKVARTIADLAE
QDQIQRPHLAEALGYRAMDRLLKQLNCQVI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=88855 OC457_RS13945 WP_080176169.1 2972551..2974083(-) (comM) [Photobacterium toruni strain CECT 9189]
ATGACACTTGCTATTGTTCATAGTCGAGCTTGTGTGGGCGTGGAAGCCCCACCGGTAACAGTTGAGGTACATTTAAGTAA
TGGGATGCCAAGTTTCACGCTTGTTGGTTTGCCTGAAACAACAGTAAAAGAGGCTAAAGATCGTGTTCGAAGTGCAATTA
TCAATGCTCAATTTGAATTTCCATCGCGACGAATCACGGTCAATTTAGCCCCTGCTGATCTACCTAAAGAAGGAGGACGG
TTTGATTTGCCTATCGCTCTGGGTATTTTAGCGGCTTCTGGGCAGATTCCGTCTGATCGACTAGCACAGCATGAGTTTAT
AGGCGAACTGGCATTGTCAGGAGATTTACGCCCCGTTAAAGGTGCATTACCCGCAGCATTGGCGGCATTAAATGCTAAGC
GGTGTTTGATTGTGCCTGATAAAAATGGTGATCAAGTTGCGCTCGTGGCAGAAAAACAGCATAAATCAGCACCCAGTTTA
TTAGCAGTATGCGGGTTTTTATGTGGTCAACAACAGTTGCAATTACACCGTCAGCCGCGATCTAAAGCGCCATCGACAAT
AATTAATGAGCAGCGTGATATGCAAGATATTATTGGTCAACAACAAGGTAAGCGGGCTTTAGAAATTGCAGCGGCAGGCA
GTCATAATTTATTATTATTAGGTCCGCCGGGTACTGGAAAAACCATGTTAGCCTCTCGATTACGGGATCTGTTGCCACCA
ATGACCCATCAAGAAGCGATTGAAACAGCGGCGGTTGCTTCTTTGACTCAACAATCATTACATCATGGAAATTGGCTTAA
TCGTCCCTTTCGAACACCACATCACTCCAGCTCTATGGCTGCTTTAGTAGGGGGTGGCTCGGTGCCGAAACCGGGTGAAA
TTTCACTCGCACACAATGGACTGTTATTTTTAGATGAAATGCCTGAATTTGAACGCAAAGTGTTAGATTCTTTGCGTGAG
CCGTTAGAATCAGGGCAAATTGTCATTTCACGCGCTACTGCAAAAACGACTTTTCCAGCTCGTTTTCAATTAATCGGTGC
ATTAAACCCAAGTCCAACAGGTTATTACGAAGGCAATCAATCACGAACGAATCCCCAAGCTATTTTACGTTATTTAAGCC
GTTTATCAGGACCTTTGTTAGACCGCTTTGATATGTCTTTAGAGATCCCTGCGTTACCTCGTGGAACACTAACCACGGGA
GGTGATCGTGGTGAGCCAAGCTCAATAATTAAAGCGCGCGTCGATCAAGCACGTGAACGGATGTTAGCTCGTTGTGGCAA
AGTGAATGCATTACTTTCTACTAGAGAATTAGATAAACACTGTGAATTATCGTTTAAAGATGCTGAATTTTTAGAGAATG
CCTTACACCAACTAGGCTTGTCAGTGCGTGCCTATCACCGAATTATAAAGGTCGCGCGTACGATTGCTGATTTAGCTGAG
CAGGATCAGATTCAGCGCCCACATTTAGCTGAAGCATTAGGGTATCGAGCGATGGATCGGTTATTGAAGCAACTGAATTG
TCAGGTGATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4UN14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.275

100

0.763
  comM Vibrio cholerae strain A1552

75.538

100

0.757
  comM Glaesserella parasuis strain SC1401

64.822

99.216

0.643
  comM Haemophilus influenzae Rd KW20

63.708

99.412

0.633
  comM Legionella pneumophila str. Paris

50.8

98.039

0.498
  comM Legionella pneumophila strain ERS1305867

50.8

98.039

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.216

0.425

Multiple sequence alignment