Detailed information NTG0888297

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RS031_RS24535
• Genome accession: NZ_CP136016
• Coordinates: 5192786..5194309 (+)
• Length: 507 a.a.
• NCBI ID: WP_346826526.1
• Uniprot ID: -
• Organism: Serratia inhibens strain CCGG2742
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 5187786..5199309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS031_RS24510	ilvE	5187986..5188912 (-)	927	WP_346826523.1	branched-chain-amino-acid transaminase	-
RS031_RS24515	ilvM	5188935..5189192 (-)	258	WP_065506780.1	acetolactate synthase 2 small subunit	-
RS031_RS24520	ilvG	5189189..5190835 (-)	1647	WP_346826524.1	acetolactate synthase 2 catalytic subunit	-
RS031_RS24525	ilvL	5190978..5191076 (-)	99	WP_013814970.1	ilv operon leader peptide	-
RS031_RS24530	-	5191210..5192442 (-)	1233	WP_346826525.1	MFS transporter	-
RS031_RS24535	comM	5192786..5194309 (+)	1524	WP_346826526.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
RS031_RS24540	-	5194337..5194675 (-)	339	WP_065506784.1	DUF413 domain-containing protein	-
RS031_RS24545	hdfR	5194795..5195622 (+)	828	WP_346826527.1	HTH-type transcriptional regulator HdfR	-
RS031_RS24550	yjfF	5195627..5196619 (-)	993	WP_013814974.1	galactofuranose ABC transporter, permease protein YjfF	-
RS031_RS24555	ytfT	5196616..5197617 (-)	1002	WP_346826528.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
RS031_RS24560	ytfR	5197635..5199149 (-)	1515	WP_346826529.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-

Sequence

Protein

• Length: 507 a.a.
• Molecular weight: 54419.82 Da
• Isoelectric Point: 8.0968

>NTDB_id=888297 RS031_RS24535 WP_346826526.1 5192786..5194309(+) (comM) [Serratia inhibens strain CCGG2742]
MSLAVIYTRATMGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADQLARYEFLGELALSGTLRGVSGAIPAALAAMDAGRQLILAAANGKEVGLIAQSETRVAEHL
LDVCAFLLGKGVLPAASAPAAAETRQDAADLQDILGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
REALESVAVASLLHHPAETLPWRQRPFRAPHHSASMVALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGILSKKRAG
GESSIQVRERVLQARERQLCRAGKINALLSNPEVERDCTLSAADADFLETTLNKLGLSVRAWQRILKVARTLADLAGDRD
IDKRHLSEALGYRCMDRLLLQLHRSLE

Nucleotide

• Length: 1524 bp

>NTDB_id=888297 RS031_RS24535 WP_346826526.1 5192786..5194309(+) (comM) [Serratia inhibens strain CCGG2742]
ATGTCACTGGCGGTTATCTATACCCGGGCAACGATGGGCGTTCAGGCCCCTTCGGTGACGGTAGAAGTGCATATCAGCAA
CGGGTTGCCCGGCCTGACCATGGTCGGTCTGCCGGAAACGACAGTGAAAGAAGCCCGCGATCGGGTACGCAGCGCGTTGA
TCAACAACGGTTTCACCTTTCCCGCCCGACGCATCACCGTCAATTTGGCACCGGCCGATCTTCCCAAAGAGGGCGGCCGT
TACGATCTGCCGATTGCCCTGGCGATCCTCGCCGCCTCCGAACAACTGCCGGCCGATCAGCTGGCGCGCTACGAGTTCCT
CGGGGAGCTGGCGCTCTCCGGCACTCTACGAGGGGTAAGCGGCGCGATACCCGCCGCGCTGGCGGCTATGGATGCCGGAA
GGCAACTGATTCTCGCGGCGGCCAATGGTAAGGAAGTCGGCCTGATTGCGCAGAGTGAAACCCGGGTGGCGGAACACCTG
CTGGACGTGTGCGCTTTTCTGTTGGGCAAAGGAGTTTTACCGGCGGCCAGCGCCCCAGCCGCTGCCGAAACCCGGCAGGA
CGCCGCCGATCTGCAGGATATTCTGGGCCAGGAGCAGGCCAAGCGTGCGTTGGAGATCGCCGCCGCAGGGGGGCATAACC
TGCTGCTGGTCGGCCCGCCGGGCACCGGAAAAACCATGTTGGCCAGTCGTCTCAATGGCCTGCTGCCACCGCTGACCGAC
CGGGAGGCCCTGGAAAGCGTGGCCGTAGCCAGCCTGCTGCATCACCCTGCTGAAACGCTGCCATGGCGCCAGCGGCCATT
TCGCGCACCGCATCACAGCGCCTCAATGGTCGCGCTGGTGGGCGGCGGCTCACTGCCGCGACCGGGGGAAATCTCCATGG
CGCACAACGGCGTACTGTTTCTGGACGAGTTGCCGGAATTCGAACGGCGCGTGCTGGATGCCCTGCGTGAACCGCTGGAG
TCTGGCGAGATCGTCATTTCACGCGCCAGCGCCAAGGTCTGCTTTCCGGCCAGGGTGCAGTTGATCGCAGCAATGAATCC
CAGCCCGACAGGACACTACCAGGGCATGCATAACCGTGCGTCGCCGCAGCAGGTCCTGCGCTATCTCGGGCGGCTTTCAG
GGCCGTTTCTCGATCGTTTCGATTTATCGATTGAGGTGCCGTTGCTGCCGCCAGGCATTCTCAGTAAAAAGCGCGCAGGC
GGAGAAAGCAGCATTCAGGTACGGGAGCGGGTATTGCAGGCACGTGAGAGGCAGCTCTGCCGGGCAGGAAAAATCAACGC
CCTGTTGAGTAACCCCGAAGTCGAGCGGGATTGTACGCTTAGCGCAGCAGACGCCGATTTTCTTGAGACTACGTTAAACA
AGTTGGGATTATCGGTTCGCGCCTGGCAACGAATTTTAAAAGTGGCACGTACGCTGGCGGATTTGGCAGGGGATCGGGAT
ATTGATAAGCGCCACCTGAGCGAAGCGCTTGGTTACCGTTGTATGGACCGCTTGCTGTTGCAGCTGCACCGCAGCCTGGA
ATAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-389)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	66.403	99.803	0.663
comM	Glaesserella parasuis strain SC1401	65.68	100	0.657
comM	Vibrio cholerae strain A1552	63.546	99.014	0.629
comM	Vibrio campbellii strain DS40M4	63.347	99.014	0.627
comM	Legionella pneumophila str. Paris	50.403	97.83	0.493
comM	Legionella pneumophila strain ERS1305867	50.403	97.83	0.493
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.078	100	0.464