Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU77_RS01660 Genome accession   NZ_AP024852
Coordinates   347177..347737 (+) Length   186 a.a.
NCBI ID   WP_048899184.1    Uniprot ID   -
Organism   Photobacterium swingsii strain CECT 7576     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 342177..352737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU77_RS01650 - 342215..343984 (-) 1770 WP_107303010.1 PglL family O-oligosaccharyltransferase -
  OCU77_RS01655 uvrA 344089..346923 (-) 2835 WP_048899183.1 excinuclease ABC subunit UvrA -
  OCU77_RS01660 ssb 347177..347737 (+) 561 WP_048899184.1 single-stranded DNA-binding protein Machinery gene
  OCU77_RS01665 - 347831..348718 (-) 888 WP_048899185.1 LysR family transcriptional regulator -
  OCU77_RS01670 csrD 348931..350868 (+) 1938 WP_048899186.1 RNase E specificity factor CsrD -
  OCU77_RS01675 - 351019..352506 (+) 1488 WP_048899187.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20381.41 Da        Isoelectric Point: 4.9371

>NTDB_id=88794 OCU77_RS01660 WP_048899184.1 347177..347737(+) (ssb) [Photobacterium swingsii strain CECT 7576]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITIATSESWRDKNTGEQREKTEWHRVALFGKVAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQERYTTEVVVQGFNGTMQMLGGRQGGGQGMGAQGGMGGGQQQGNWGQPQQPAAQQQNNFAPQQQSA
PQQAPAQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=88794 OCU77_RS01660 WP_048899184.1 347177..347737(+) (ssb) [Photobacterium swingsii strain CECT 7576]
ATGGCCAGTCGTGGCGTAAATAAAGTTATCCTAGTCGGTAACTTAGGTAATGACCCAGAGATCCGTTACATGCCAAGCGG
CGGTGCAGTAGCAAACATCACTATTGCTACTTCAGAGTCATGGCGTGATAAAAACACTGGCGAACAACGTGAGAAAACAG
AATGGCACCGTGTGGCGCTATTCGGTAAAGTTGCAGAAGTTGCTGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAAGGCCAACTACAAACGCGTAAGTGGCAAGATCAAAACGGCCAAGAACGTTACACAACAGAAGTTGTTGTTCAAGGCTT
TAACGGCACAATGCAAATGCTTGGTGGTCGTCAAGGCGGCGGTCAAGGTATGGGTGCACAAGGTGGCATGGGCGGCGGTC
AGCAGCAAGGTAACTGGGGTCAACCTCAACAACCTGCAGCGCAACAGCAGAATAATTTTGCACCACAGCAGCAATCTGCT
CCGCAACAAGCGCCAGCTCAACAGCCACAGCAGCAATACAATGAGCCACCAATGGACTTTGATGACGATATCCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.57

100

0.796
  ssb Glaesserella parasuis strain SC1401

58.919

99.462

0.586
  ssb Neisseria gonorrhoeae MS11

47.283

98.925

0.468
  ssb Neisseria meningitidis MC58

46.196

98.925

0.457

Multiple sequence alignment