Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RO483_RS13600 Genome accession   NZ_CP135968
Coordinates   2926896..2927432 (-) Length   178 a.a.
NCBI ID   WP_315956608.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain S10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2921896..2932432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO483_RS13580 (RO483_13580) - 2922215..2922547 (-) 333 WP_005381196.1 hypothetical protein -
  RO483_RS13585 (RO483_13585) gspM 2922540..2923190 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  RO483_RS13590 (RO483_13590) - 2923187..2924632 (-) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  RO483_RS13595 (RO483_13595) csrD 2924644..2926653 (-) 2010 WP_171346111.1 RNase E specificity factor CsrD -
  RO483_RS13600 (RO483_13600) ssb 2926896..2927432 (-) 537 WP_315956608.1 single-stranded DNA-binding protein Machinery gene
  RO483_RS13605 (RO483_13605) qstR 2927710..2928354 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  RO483_RS13610 (RO483_13610) galU 2928514..2929386 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RO483_RS13615 (RO483_13615) uvrA 2929536..2932358 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19764.80 Da        Isoelectric Point: 4.9164

>NTDB_id=887934 RO483_RS13600 WP_315956608.1 2926896..2927432(-) (ssb) [Vibrio alginolyticus strain S10]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQQ
SQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=887934 RO483_RS13600 WP_315956608.1 2926896..2927432(-) (ssb) [Vibrio alginolyticus strain S10]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAAGGTGGAT
GGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAGCAA
TCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.826
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.596
  ssb Neisseria meningitidis MC58

46.328

99.438

0.461
  ssb Neisseria gonorrhoeae MS11

45.763

99.438

0.455