Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RO483_RS13605 Genome accession   NZ_CP135968
Coordinates   2927710..2928354 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain S10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2922710..2933354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO483_RS13590 (RO483_13590) - 2923187..2924632 (-) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  RO483_RS13595 (RO483_13595) csrD 2924644..2926653 (-) 2010 WP_171346111.1 RNase E specificity factor CsrD -
  RO483_RS13600 (RO483_13600) ssb 2926896..2927432 (-) 537 WP_315956608.1 single-stranded DNA-binding protein Machinery gene
  RO483_RS13605 (RO483_13605) qstR 2927710..2928354 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  RO483_RS13610 (RO483_13610) galU 2928514..2929386 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RO483_RS13615 (RO483_13615) uvrA 2929536..2932358 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=887935 RO483_RS13605 WP_005381237.1 2927710..2928354(+) (qstR) [Vibrio alginolyticus strain S10]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=887935 RO483_RS13605 WP_005381237.1 2927710..2928354(+) (qstR) [Vibrio alginolyticus strain S10]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519