Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RUL31_RS19370 Genome accession   NZ_CP135964
Coordinates   3926117..3926236 (+) Length   39 a.a.
NCBI ID   WP_315916114.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921117..3931236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS19350 (RUL31_19350) - 3921165..3922541 (-) 1377 WP_315916110.1 YncE family protein -
  RUL31_RS19355 (RUL31_19355) - 3922581..3923942 (-) 1362 WP_315916111.1 YncE family protein -
  RUL31_RS19360 (RUL31_19360) - 3924224..3924778 (+) 555 WP_315916112.1 YdhK family protein -
  RUL31_RS19365 (RUL31_19365) rapF 3924991..3926133 (+) 1143 WP_315916113.1 tetratricopeptide repeat protein Regulator
  RUL31_RS19370 (RUL31_19370) phrF 3926117..3926236 (+) 120 WP_315916114.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  RUL31_RS19375 (RUL31_19375) - 3926489..3926968 (+) 480 WP_094232937.1 hypothetical protein -
  RUL31_RS19380 (RUL31_19380) - 3927118..3927906 (+) 789 WP_088118184.1 hypothetical protein -
  RUL31_RS19385 (RUL31_19385) - 3927893..3928567 (+) 675 WP_035175329.1 hypothetical protein -
  RUL31_RS19390 (RUL31_19390) - 3928577..3929374 (+) 798 WP_315917093.1 hypothetical protein -
  RUL31_RS19395 (RUL31_19395) - 3929377..3930024 (+) 648 WP_315916115.1 ABC transporter ATP-binding protein -
  RUL31_RS19400 (RUL31_19400) - 3930017..3930574 (+) 558 WP_315916116.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4188.13 Da        Isoelectric Point: 10.4997

>NTDB_id=887858 RUL31_RS19370 WP_315916114.1 3926117..3926236(+) (phrF) [Bacillus atrophaeus strain CD303]
MKLKSKILLSCLVLSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=887858 RUL31_RS19370 WP_315916114.1 3926117..3926236(+) (phrF) [Bacillus atrophaeus strain CD303]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGTCCTAAGCACAGTGTTTGTCGCAACGAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

84.615

66.667

0.564
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436
  comEA Vibrio cholerae C6706

42.857

89.744

0.385
  comEA Vibrio cholerae strain A1552

42.857

89.744

0.385