Detailed information NTG0887857

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RUL31_RS19365
• Genome accession: NZ_CP135964
• Coordinates: 3924991..3926133 (+)
• Length: 380 a.a.
• NCBI ID: WP_315916113.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain CD303
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3919991..3931133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RUL31_RS19345 (RUL31_19345)	-	3920457..3921158 (+)	702	WP_094232932.1	bacteriocin biosynthesis protein AlbG	-
RUL31_RS19350 (RUL31_19350)	-	3921165..3922541 (-)	1377	WP_315916110.1	YncE family protein	-
RUL31_RS19355 (RUL31_19355)	-	3922581..3923942 (-)	1362	WP_315916111.1	YncE family protein	-
RUL31_RS19360 (RUL31_19360)	-	3924224..3924778 (+)	555	WP_315916112.1	YdhK family protein	-
RUL31_RS19365 (RUL31_19365)	rapF	3924991..3926133 (+)	1143	WP_315916113.1	tetratricopeptide repeat protein	Regulator
RUL31_RS19370 (RUL31_19370)	phrF	3926117..3926236 (+)	120	WP_315916114.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
RUL31_RS19375 (RUL31_19375)	-	3926489..3926968 (+)	480	WP_094232937.1	hypothetical protein	-
RUL31_RS19380 (RUL31_19380)	-	3927118..3927906 (+)	789	WP_088118184.1	hypothetical protein	-
RUL31_RS19385 (RUL31_19385)	-	3927893..3928567 (+)	675	WP_035175329.1	hypothetical protein	-
RUL31_RS19390 (RUL31_19390)	-	3928577..3929374 (+)	798	WP_315917093.1	hypothetical protein	-
RUL31_RS19395 (RUL31_19395)	-	3929377..3930024 (+)	648	WP_315916115.1	ABC transporter ATP-binding protein	-
RUL31_RS19400 (RUL31_19400)	-	3930017..3930574 (+)	558	WP_315916116.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45586.14 Da
• Isoelectric Point: 5.3891

>NTDB_id=887857 RUL31_RS19365 WP_315916113.1 3924991..3926133(+) (rapF) [Bacillus atrophaeus strain CD303]
MTGVISSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEENQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM
DYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDFKQYEDAISHFKKAYTMAESEEQPQLMGRTLYNIGLCKNSQDQYESA
ITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYLSGPDEEAIQ
KFFDFLESKMMYADLEDFALDVAKYYYGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV

Nucleotide

• Length: 1143 bp

>NTDB_id=887857 RUL31_RS19365 WP_315916113.1 3924991..3926133(+) (rapF) [Bacillus atrophaeus strain CD303]
GTGACAGGCGTCATATCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAAACCAGGATCTTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAAAATGAGGATAGAGGAACAGCCGCGACTG
TCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATTTCTTCAGGGG
CATGTACGAACTGGACCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTGTAA
AGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCCATG
GACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTTGTT
TGCTACCAATTTCTTAGATTTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAATCCG
AAGAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATTGGGCTTTGCAAAAACAGCCAAGACCAGTATGAGTCAGCA
ATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAATATTCTTCCTTCTCTGCCTCAAGCTTATTTTTTGAT
TACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAGAGG
CCGGAGATATCATTTACTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCTGGTCCGGATGAAGAGGCAATTCAG
AAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTATTA
TGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACGAGTAAGGCAGCTTATTCAAGGAGGAGTGA
AGTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (222-289)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	91.864	100	0.921
rapC	Bacillus subtilis subsp. subtilis str. 168	57.895	100	0.579