Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU87_RS16885 Genome accession   NZ_AP024850
Coordinates   3666496..3668028 (-) Length   510 a.a.
NCBI ID   WP_261857602.1    Uniprot ID   -
Organism   Photobacterium sanguinicancri strain CECT 7579     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3661496..3673028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU87_RS16860 - 3662347..3662520 (+) 174 WP_261857600.1 hypothetical protein -
  OCU87_RS16865 - 3662635..3662901 (+) 267 WP_062690438.1 YihD family protein -
  OCU87_RS16870 ccoG 3663179..3664609 (+) 1431 WP_094957146.1 cytochrome c oxidase accessory protein CcoG -
  OCU87_RS16875 - 3664712..3665698 (+) 987 WP_261857601.1 serine/threonine protein kinase -
  OCU87_RS16880 - 3665832..3666431 (+) 600 WP_390960849.1 DsbA family protein -
  OCU87_RS16885 comM 3666496..3668028 (-) 1533 WP_261857602.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU87_RS16890 ilvG 3668409..3670055 (+) 1647 WP_062690436.1 acetolactate synthase 2 catalytic subunit -
  OCU87_RS16895 ilvM 3670055..3670303 (+) 249 WP_062690435.1 acetolactate synthase 2 small subunit -
  OCU87_RS16900 ilvE 3670325..3671260 (+) 936 WP_261857603.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55089.33 Da        Isoelectric Point: 7.4872

>NTDB_id=88785 OCU87_RS16885 WP_261857602.1 3666496..3668028(-) (comM) [Photobacterium sanguinicancri strain CECT 7579]
MTLAIVHSRACVGVNAPPVTVEVHISNGMPALTLVGLPETTVKEARDRVRSAIVNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPTTKLPSHEFLGELALSGQLRAVKGALPAALAAKRLSRCLVVPDGNGDQVGLVEGCEHKSAADL
LAVCGYLCDQQPLSLFQRTATEDEVIVDDYQRDMQDIIGQKQGKRALEIAAAGGHNVLFLGPPGTGKTMLASRLCDLLPP
MSIAEALETAAVTSLTQQSLHQGNWRQRPFRTPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPARFQLIGALNPSPTGYYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSIEIPLLPRGTLAEG
GDRGEPTAVIQERVLQARQLMVERSEKVNALLSTRELDRYCGLSKADATFLETALHQLGLSIRAYHRIIKVARTIADLAG
ESQISRSHLAEALGYRAMDRLLKQLSAQMV

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=88785 OCU87_RS16885 WP_261857602.1 3666496..3668028(-) (comM) [Photobacterium sanguinicancri strain CECT 7579]
ATGACTTTGGCCATTGTTCATAGCCGTGCGTGTGTTGGAGTGAATGCGCCGCCTGTTACCGTGGAAGTACATATTAGTAA
TGGGATGCCAGCGCTCACGTTAGTCGGGCTGCCTGAAACCACAGTGAAAGAGGCCCGTGATCGGGTACGCAGTGCGATTG
TAAATGCCAACTTTGAGTTCCCTTCACGCCGTATTACCGTCAACTTAGCCCCTGCGGATCTACCGAAAGAAGGGGGCCGT
TTTGACTTGCCTATTGCTCTTGGCATACTTGCAGCATCAGGACAAATACCGACAACTAAGCTACCGAGCCATGAATTTTT
AGGCGAGTTAGCGTTATCTGGCCAGCTTCGTGCTGTTAAAGGTGCATTGCCTGCCGCCCTTGCAGCAAAACGGTTGAGTC
GCTGCTTAGTGGTTCCCGATGGTAATGGTGATCAGGTTGGTCTGGTGGAAGGTTGTGAGCATAAATCAGCGGCTGATTTA
CTGGCGGTGTGTGGGTATTTATGTGATCAGCAGCCTCTCTCTTTGTTCCAACGTACCGCGACTGAAGATGAGGTTATTGT
TGATGATTATCAGCGCGATATGCAAGATATTATCGGCCAAAAACAAGGTAAACGTGCGTTAGAAATTGCGGCGGCGGGTG
GTCATAACGTACTGTTTCTCGGGCCGCCAGGAACAGGTAAAACCATGCTTGCGTCTCGCCTGTGTGATTTGTTACCACCG
ATGTCGATAGCCGAAGCACTCGAAACGGCAGCCGTGACTTCGCTGACCCAGCAAAGTTTGCACCAAGGCAACTGGCGACA
ACGTCCATTTCGAACTCCTCACCATTCGAGCTCAATGGCAGCCTTGGTGGGGGGCGGTTCTGTGCCGCGACCTGGGGAAA
TATCACTGGCGCACAATGGGTTACTTTTTTTGGATGAGATGCCTGAGTTTGAACGTAAGGTTTTGGATTCATTACGAGAA
CCGCTTGAATCGGGCGAAATTGTGATTTCGCGCGCGACCAGTAAAGCGACCTTCCCTGCCCGTTTTCAGCTTATTGGTGC
CTTGAACCCCAGTCCAACAGGTTATTACGAAGGCAACCAATCACGAACCAATCCGCAGGCGATTTTGCGTTATTTAAGTC
GTCTCTCTGGGCCGTTATTAGACCGTTTTGATATGTCGATTGAGATCCCGTTATTGCCACGAGGGACACTTGCCGAAGGG
GGCGATCGGGGAGAGCCGACTGCGGTGATTCAAGAGCGGGTGTTGCAAGCGAGGCAATTGATGGTTGAGCGTTCAGAGAA
AGTGAATGCGTTGCTATCGACCCGAGAGCTCGATCGTTATTGTGGATTGTCGAAAGCAGATGCGACGTTTTTAGAAACTG
CTCTTCATCAATTGGGGTTATCTATCCGCGCCTACCATCGGATTATCAAGGTAGCGCGAACCATTGCCGATTTAGCCGGA
GAAAGTCAGATTTCACGGAGCCATCTAGCAGAAGCGCTGGGTTATCGTGCGATGGATCGATTGCTGAAGCAGTTAAGTGC
GCAAATGGTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

77.451

100

0.775
  comM Vibrio campbellii strain DS40M4

76.078

100

0.761
  comM Glaesserella parasuis strain SC1401

63.672

100

0.639
  comM Haemophilus influenzae Rd KW20

63.116

99.412

0.627
  comM Legionella pneumophila str. Paris

48.297

97.843

0.473
  comM Legionella pneumophila strain ERS1305867

48.297

97.843

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.216

0.424

Multiple sequence alignment