Detailed information NTG0887679

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: RS899_RS24140
• Genome accession: NZ_CP135919
• Coordinates: 5261175..5262239 (-)
• Length: 354 a.a.
• NCBI ID: WP_024764148.1
• Uniprot ID: A0A1B8VEU1
• Organism: Pseudomonas sp. C9-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5256175..5267239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS899_RS24115	aroK	5256758..5257249 (-)	492	WP_052239087.1	shikimate kinase AroK	-
RS899_RS24120	pilQ	5257285..5259357 (-)	2073	WP_233297421.1	type IV pilus secretin PilQ	Machinery gene
RS899_RS24125	pilP	5259411..5259935 (-)	525	WP_024764145.1	type 4a pilus biogenesis lipoprotein PilP	-
RS899_RS24130	pilO	5259932..5260585 (-)	654	WP_233297423.1	type 4a pilus biogenesis protein PilO	-
RS899_RS24135	pilN	5260582..5261175 (-)	594	WP_315808249.1	type 4a pilus biogenesis protein PilN	-
RS899_RS24140	comM	5261175..5262239 (-)	1065	WP_024764148.1	pilus assembly protein PilM	Machinery gene
RS899_RS24145	-	5262425..5264854 (+)	2430	WP_315808250.1	penicillin-binding protein 1A	-
RS899_RS24150	-	5265031..5265498 (+)	468	WP_054911085.1	hypothetical protein	-
RS899_RS24155	-	5265492..5265986 (-)	495	WP_054911084.1	YgjP-like metallopeptidase domain-containing protein	-
RS899_RS24160	-	5266036..5266806 (-)	771	WP_315808251.1	class I SAM-dependent methyltransferase	-
RS899_RS24165	-	5266844..5267149 (-)	306	WP_315808252.1	hypothetical protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37761.04 Da
• Isoelectric Point: 4.4486

>NTDB_id=887679 RS899_RS24140 WP_024764148.1 5261175..5262239(-) (comM) [Pseudomonas sp. C9-3]
MLGLFNKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVVAKARTAVKTSAV
AVAGSAVITKTIEMDGGLSDDELENQLKIEADQYIPYPLEEVAIDFEVQGTSARNAERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERAFSLLGDQLGGNADELTVAVVDIGATMTTLSVLHHGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTPTLVANP
FADMVLSGKVNAGALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=887679 RS899_RS24140 WP_024764148.1 5261175..5262239(-) (comM) [Pseudomonas sp. C9-3]
GTGCTAGGGCTCTTCAATAAGAAAGCGAACACGCTGCTGGGGATAGACATCAGTTCGACTTCGGTCAAACTTCTCGAATT
GAGCCGCTCTGGAGGCCGCTACAAGGTAGAGGCCTACGCTGTCGAGCCGCTCCCGCCCAATGCAGTGGTAGAAAAGAACA
TCGCTGAGCTGGAGGGTGTCGGCCAGGCGTTGTCACGTGTGGTCGCCAAAGCGCGGACCGCTGTGAAAACGTCTGCGGTC
GCGGTTGCCGGCTCGGCGGTCATCACCAAAACCATCGAGATGGACGGCGGACTCTCGGACGACGAGTTGGAGAACCAGCT
CAAGATCGAGGCCGACCAGTACATCCCCTATCCCCTCGAAGAGGTCGCGATCGACTTCGAGGTGCAAGGCACGTCCGCGC
GCAACGCAGAGCGCGTCGATGTTCTTCTTGCCGCTTGCCGCAAGGAAAACGTCGAGGTGCGCGAAGCTGCGCTGGCGCTC
GCGGGTCTGACGGCCAAGGTCGTCGACGTTGAAGCCTATGCGCTGGAGCGAGCATTCAGTCTGCTGGGAGACCAGTTGGG
CGGCAATGCCGACGAGCTCACAGTTGCGGTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTCCTGCACCACGGTC
GCACTATCTATACGCGCGAACAGCTCTTCGGTGGGCGCCAGTTGACCGAGGAAATCCAGCGTCGCTATGGCCTGTCGGTC
GAGGAAGCGGGCCTTGCCAAGAAGCAGGGTGGTCTTCCGGATGACTACGACAGCGAAGTGCTGCAACCGTTCAAGGATGC
CGTCGTTCAGCAGGTATCCCGTTCATTGCAGTTCTTCTTCGCCGCCGGCCAGTTCAACGATGTGGATTACATCCTGCTGG
CGGGTGGCACAGCGTCCATCCCTGACCTGGATCGCCTGATCCAGCAGAAGATCGGTACTCCGACCCTGGTGGCCAACCCG
TTCGCCGACATGGTGTTGAGCGGCAAGGTCAACGCCGGTGCGCTGGCCAGCGATGCGCCCGCGCTGATGATTGCCTGCGG
TCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

3D structure

• AlphaFold DB: A0A1B8VEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	57.345	100	0.573
pilM	Acinetobacter baumannii D1279779	57.345	100	0.573
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.61	100	0.466