Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RP726_RS09785 Genome accession   NZ_CP135727
Coordinates   2154229..2155752 (-) Length   507 a.a.
NCBI ID   WP_153247793.1    Uniprot ID   A0A5Q0BHX8
Organism   Candidatus Methylospira mobilis strain SPMX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2149229..2160752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP726_RS09745 (RP726_09745) - 2149751..2150224 (-) 474 WP_153247787.1 hypothetical protein -
  RP726_RS09750 (RP726_09750) - 2150276..2150725 (-) 450 WP_153247788.1 vitamin K epoxide reductase family protein -
  RP726_RS09755 (RP726_09755) - 2150757..2151281 (-) 525 WP_153247789.1 BCAM0308 family protein -
  RP726_RS09760 (RP726_09760) - 2151750..2152433 (-) 684 WP_153247790.1 DUF6629 family protein -
  RP726_RS09765 (RP726_09765) - 2152971..2153162 (-) 192 WP_228125070.1 Hsp20/alpha crystallin family protein -
  RP726_RS09770 (RP726_09770) - 2153155..2153286 (-) 132 WP_265588131.1 hypothetical protein -
  RP726_RS09775 (RP726_09775) - 2153362..2153529 (-) 168 WP_153247791.1 DUF2934 domain-containing protein -
  RP726_RS09780 (RP726_09780) - 2153887..2154144 (+) 258 WP_153247792.1 hypothetical protein -
  RP726_RS09785 (RP726_09785) comM 2154229..2155752 (-) 1524 WP_153247793.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RP726_RS09790 (RP726_09790) - 2155775..2156029 (-) 255 WP_153247794.1 accessory factor UbiK family protein -
  RP726_RS09795 (RP726_09795) glnK 2156347..2156685 (+) 339 WP_153247795.1 P-II family nitrogen regulator -
  RP726_RS09800 (RP726_09800) - 2156696..2157595 (+) 900 Protein_1967 ammonium transporter -
  RP726_RS09805 (RP726_09805) - 2157622..2158179 (-) 558 WP_315698893.1 recombinase family protein -
  RP726_RS09810 (RP726_09810) - 2158182..2158589 (-) 408 WP_315698892.1 hypothetical protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55073.40 Da        Isoelectric Point: 8.0040

>NTDB_id=887601 RP726_RS09785 WP_153247793.1 2154229..2155752(-) (comM) [Candidatus Methylospira mobilis strain SPMX]
MPLATVFARSRNGIDAPAVTVEVHIANGLPNLSIVGLPETAVKESKDRVRGAILNSHLEFPARRITVNMAPADVPKEGGR
FDLAIALGILAASGQIKSDRLEQFECLGELSLSGALRPFSGALPVAIQSYRAGRRLILPLENAEEAALVEGCEILPARHL
LEVCAHINGLSPLSNQPPVDFTTGRQAADTMLDICDVRGHFQAKRALEIAAAGRHNLLMYGPPGTGKSMLAARLPGILPL
QTQDEALESAAICSISSQPFVIGNWRIPPFRSPHHTASATAMVGGGSNPRPGEISLAHNGVLFLDELPEFDRKVLEVLRE
PLESGCITISRAARQADFPARFQLLAAMNPCPCGYLGDPSGRCRCTSEQVQRYRTRISGPLLDRIDMHIEVIRIAPEALR
AHPPADEETSLHIRRRVVDARNRAMELRGVASADLTPQQVKQHCKLNNNSLSLLEQAVSKLGLSHRAYHRILKVSRTIAD
LAQSESIEPPHISEAIAYRKLDRVPLI

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=887601 RP726_RS09785 WP_153247793.1 2154229..2155752(-) (comM) [Candidatus Methylospira mobilis strain SPMX]
ATGCCGCTAGCCACCGTCTTTGCCCGCTCACGCAACGGTATAGACGCGCCTGCTGTTACCGTGGAAGTTCATATCGCCAA
CGGACTGCCTAATTTATCCATCGTCGGTTTACCGGAAACAGCGGTAAAGGAAAGCAAGGATCGCGTTCGCGGCGCCATAC
TGAACAGTCATCTCGAATTTCCGGCGCGGCGCATTACCGTCAACATGGCCCCCGCCGATGTCCCCAAGGAAGGAGGCCGC
TTCGACCTGGCCATTGCGCTGGGCATTCTGGCCGCATCAGGACAGATCAAAAGCGACAGGCTGGAACAATTCGAATGTCT
GGGCGAACTGTCATTGAGCGGCGCGTTACGCCCGTTTAGCGGCGCGCTGCCGGTTGCGATTCAGAGTTATCGCGCCGGCC
GGCGTCTGATACTGCCGCTGGAAAATGCCGAAGAAGCCGCACTGGTCGAAGGCTGCGAGATATTACCGGCACGGCACTTA
TTGGAAGTCTGCGCGCATATCAACGGACTGAGTCCGCTTTCGAACCAGCCACCCGTCGATTTTACCACGGGGCGGCAGGC
GGCCGACACCATGCTTGATATTTGCGATGTGCGCGGTCACTTTCAAGCCAAACGCGCGCTCGAAATTGCAGCGGCTGGCC
GGCATAACCTGTTGATGTACGGCCCGCCCGGCACCGGAAAATCCATGCTGGCGGCCAGATTGCCCGGCATACTGCCGTTA
CAGACGCAGGACGAGGCGCTGGAAAGCGCCGCAATCTGCTCCATCAGCAGCCAGCCGTTCGTGATCGGCAACTGGCGTAT
TCCCCCGTTCAGATCACCGCATCACACTGCTTCGGCCACGGCGATGGTCGGCGGAGGCAGCAACCCACGCCCCGGTGAAA
TTTCGTTGGCTCACAATGGCGTTTTATTCCTTGACGAACTGCCGGAGTTCGACCGCAAGGTGCTCGAAGTACTGCGCGAG
CCGCTGGAATCCGGTTGCATCACCATTTCGCGCGCGGCTCGCCAAGCCGATTTTCCGGCGCGCTTTCAGTTGCTGGCTGC
AATGAATCCCTGCCCGTGCGGCTATCTGGGCGATCCGTCCGGGCGTTGCCGCTGCACATCGGAACAGGTACAGCGCTACC
GCACCCGCATCTCCGGCCCTTTACTGGACAGGATCGACATGCACATCGAAGTAATCCGCATTGCGCCGGAAGCACTGCGC
GCCCATCCGCCAGCCGATGAGGAAACCAGTCTGCATATACGCCGGCGCGTCGTTGACGCGCGTAACCGCGCCATGGAGCT
ACGAGGCGTTGCCAGTGCCGATTTGACGCCACAACAAGTCAAGCAGCACTGCAAACTCAATAACAACAGCCTGAGCCTGC
TGGAACAAGCGGTATCGAAACTGGGCCTGTCGCATCGCGCGTACCATCGAATCTTGAAAGTTTCGCGCACCATCGCCGAT
CTGGCACAATCCGAAAGTATAGAGCCGCCGCATATCAGCGAAGCCATTGCCTATCGCAAGCTCGATCGTGTGCCGTTAAT
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0BHX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.465

100

0.525
  comM Glaesserella parasuis strain SC1401

52.174

99.803

0.521
  comM Vibrio campbellii strain DS40M4

51.485

99.606

0.513
  comM Haemophilus influenzae Rd KW20

50.888

100

0.509
  comM Legionella pneumophila str. Paris

48.419

99.803

0.483
  comM Legionella pneumophila strain ERS1305867

48.419

99.803

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.575

100

0.469