Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDN81_RS23700 Genome accession   NZ_AP024847
Coordinates   4910521..4911054 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens strain 2020-O-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4905521..4916054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN81_RS23670 (SMGES_46970) - 4905846..4907207 (-) 1362 WP_033636185.1 NCS2 family permease -
  LDN81_RS23675 (SMGES_46980) - 4907540..4907947 (-) 408 WP_039569623.1 VOC family protein -
  LDN81_RS23680 (SMGES_46990) - 4907995..4908663 (-) 669 WP_039569625.1 glutathione S-transferase -
  LDN81_RS23685 (SMGES_47000) - 4908660..4909103 (-) 444 WP_041036882.1 lipocalin-like domain-containing protein -
  LDN81_RS23690 (SMGES_47010) - 4909300..4909560 (+) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  LDN81_RS23695 (SMGES_47020) - 4909710..4910459 (+) 750 WP_039569629.1 3-oxoacyl-ACP reductase family protein -
  LDN81_RS23700 (SMGES_47030) ssb 4910521..4911054 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LDN81_RS23705 (SMGES_47040) uvrA 4911332..4914160 (+) 2829 WP_033636192.1 excinuclease ABC subunit UvrA -
  LDN81_RS23710 (SMGES_47050) - 4914390..4915442 (+) 1053 WP_041036884.1 NAD(P)-dependent alcohol dehydrogenase -
  LDN81_RS23715 (SMGES_47060) maa 4915473..4916030 (-) 558 WP_041036886.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=88727 LDN81_RS23700 WP_033654707.1 4910521..4911054(-) (ssb) [Serratia marcescens strain 2020-O-9]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=88727 LDN81_RS23700 WP_033654707.1 4910521..4911054(-) (ssb) [Serratia marcescens strain 2020-O-9]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAACAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment