Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RS401_RS20770 Genome accession   NZ_CP135601
Coordinates   4002232..4003026 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus sp. SI2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3997232..4008026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS20750 (RS401_20750) - 3999051..3999284 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  RS401_RS20755 (RS401_20755) - 3999333..4000061 (-) 729 WP_000172561.1 glycerophosphodiester phosphodiesterase -
  RS401_RS20760 (RS401_20760) - 4000112..4000258 (+) 147 WP_001247671.1 YycC family protein -
  RS401_RS20765 (RS401_20765) - 4000426..4001933 (-) 1508 Protein_4037 hypothetical protein -
  RS401_RS20770 (RS401_20770) spo0A 4002232..4003026 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  RS401_RS20775 (RS401_20775) spoIVB 4003314..4004612 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  RS401_RS20780 (RS401_20780) recN 4004731..4006470 (-) 1740 WP_242297320.1 DNA repair protein RecN Machinery gene
  RS401_RS20785 (RS401_20785) argR 4006738..4007187 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=887119 RS401_RS20770 WP_003161566.1 4002232..4003026(-) (spo0A) [Bacillus sp. SI2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=887119 RS401_RS20770 WP_003161566.1 4002232..4003026(-) (spo0A) [Bacillus sp. SI2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGACATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818