Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RS401_RS19025 Genome accession   NZ_CP135601
Coordinates   3675283..3676062 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus sp. SI2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3670283..3681062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS401_RS19000 (RS401_19000) uppS 3671029..3671805 (-) 777 WP_061185433.1 isoprenyl transferase -
  RS401_RS19005 (RS401_19005) frr 3671891..3672448 (-) 558 WP_000531503.1 ribosome recycling factor -
  RS401_RS19010 (RS401_19010) pyrH 3672451..3673173 (-) 723 WP_000042663.1 UMP kinase -
  RS401_RS19015 (RS401_19015) tsf 3673240..3674127 (-) 888 WP_001018581.1 translation elongation factor Ts -
  RS401_RS19020 (RS401_19020) rpsB 3674231..3674932 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  RS401_RS19025 (RS401_19025) codY 3675283..3676062 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RS401_RS19030 (RS401_19030) hslU 3676140..3677531 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  RS401_RS19035 (RS401_19035) hslV 3677554..3678096 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  RS401_RS19040 (RS401_19040) xerC 3678139..3679038 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  RS401_RS19045 (RS401_19045) trmFO 3679104..3680408 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=887116 RS401_RS19025 WP_000421288.1 3675283..3676062(-) (codY) [Bacillus sp. SI2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=887116 RS401_RS19025 WP_000421288.1 3675283..3676062(-) (codY) [Bacillus sp. SI2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459