Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RS584_RS22500 Genome accession   NZ_CP135594
Coordinates   4708099..4709619 (+) Length   506 a.a.
NCBI ID   WP_193042091.1    Uniprot ID   -
Organism   Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4703099..4714619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS584_RS22475 (RS584_22475) ilvE 4704666..4705595 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  RS584_RS22480 (RS584_22480) ilvM 4705614..4705877 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  RS584_RS22485 (RS584_22485) ilvG 4705874..4707520 (-) 1647 WP_315748663.1 acetolactate synthase 2 catalytic subunit -
  RS584_RS22490 (RS584_22490) ilvX 4707523..4707573 (-) 51 WP_166792073.1 peptide IlvX -
  RS584_RS22495 (RS584_22495) ilvL 4707660..4707758 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RS584_RS22500 (RS584_22500) comM 4708099..4709619 (+) 1521 WP_193042091.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RS584_RS22505 (RS584_22505) - 4709647..4709985 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  RS584_RS22510 (RS584_22510) hdfR 4710092..4710925 (+) 834 WP_202951935.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54774.73 Da        Isoelectric Point: 7.5295

>NTDB_id=887087 RS584_RS22500 WP_193042091.1 4708099..4709619(+) (comM) [Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSTCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVTPASPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLYKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIRG
ESSATVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=887087 RS584_RS22500 WP_193042091.1 4708099..4709619(+) (comM) [Enterobacter sp. DTU_2021_1002640_1_SI_PRY_ASU_LCPMC_013]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGGCTGACGCTGGTTGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCAGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCACGTGTGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCAGGACATTTG
CAAGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGACGCCAGCTTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCCCCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGTATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACATCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGCTCGATCCCCGGACCGGGTGAAATCTCACTGGCGC
ACAACGGCATTTTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCGGCGATGAACCCTAG
TCCTACGGGTCATTATCAGGGCAATCATAATCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATTAGGGGC
GAAAGCTCAGCAACTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio campbellii strain DS40M4

58.58

100

0.587
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437